Cobalt in PDB 3abs: Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine

All present enzymatic activity of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine:
4.3.1.7;

The structure of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine, PDB code: 3abs was solved by N.Shibata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.25
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	242.730, 242.730, 76.660, 90.00, 90.00, 120.00
R / Rfree (%)	21.4 / 24.4

The binding sites of Cobalt atom in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine (pdb code 3abs). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine, PDB code: 3abs:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine within 5.0Å range: probe atom residue distance (Å) B Occ A:Co601 b:36.3 occ:1.00 CO A:COY601 0.0 36.3 1.0 N21 A:COY601 1.8 26.8 1.0 N23 A:COY601 1.8 23.0 1.0 N24 A:COY601 1.8 36.6 1.0 N22 A:COY601 1.8 24.2 1.0 C75 A:COY601 2.0 45.5 1.0 N3B A:COY601 2.5 36.5 1.0 C19 A:COY601 2.8 39.9 1.0 C1 A:COY601 2.8 34.6 1.0 C9 A:COY601 2.8 22.7 1.0 C11 A:COY601 2.8 27.0 1.0 C14 A:COY601 2.8 27.3 1.0 C4 A:COY601 2.8 35.3 1.0 C6 A:COY601 2.9 24.0 1.0 C16 A:COY601 2.9 35.9 1.0 C74 A:COY601 3.1 44.0 1.0 C10 A:COY601 3.2 28.0 1.0 C5 A:COY601 3.2 25.8 1.0 C15 A:COY601 3.3 36.9 1.0 C9B A:COY601 3.4 41.9 1.0 C2B A:COY601 3.5 39.0 1.0 C20 A:COY601 3.6 41.9 1.0 C4B A:COY601 3.8 48.0 1.0 C2 A:COY601 4.0 39.5 1.0 C18 A:COY601 4.0 37.2 1.0 C3 A:COY601 4.1 38.0 1.0 C13 A:COY601 4.1 22.2 1.0 C17 A:COY601 4.1 44.6 1.0 C12 A:COY601 4.1 24.9 1.0 C8 A:COY601 4.1 28.6 1.0 C7 A:COY601 4.2 31.6 1.0 C73 A:COY601 4.2 51.9 1.0 C26 A:COY601 4.4 42.1 1.0 C8B A:COY601 4.6 45.7 1.0 N1B A:COY601 4.6 42.1 1.0 C35 A:COY601 4.7 27.9 1.0 C42 A:COY601 4.7 35.9 1.0 C53 A:COY601 4.8 37.8 1.0 C48 A:COY601 4.8 29.0 1.0 C46 A:COY601 4.9 27.9 1.0 C37 A:COY601 4.9 37.8 1.0 C54 A:COY601 4.9 44.1 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Adeninylpentylcobalamin and Ethanolamine within 5.0Å range: probe atom residue distance (Å) B Occ C:Co601 b:42.1 occ:1.00 CO C:COY601 0.0 42.1 1.0 N21 C:COY601 1.8 30.9 1.0 N24 C:COY601 1.8 33.2 1.0 N23 C:COY601 1.8 28.1 1.0 N22 C:COY601 1.8 38.1 1.0 C75 C:COY601 2.0 49.1 1.0 N3B C:COY601 2.6 41.3 1.0 C19 C:COY601 2.8 39.0 1.0 C1 C:COY601 2.8 35.3 1.0 C11 C:COY601 2.8 34.0 1.0 C9 C:COY601 2.8 31.1 1.0 C14 C:COY601 2.8 40.9 1.0 C4 C:COY601 2.8 43.0 1.0 C6 C:COY601 2.9 32.0 1.0 C16 C:COY601 2.9 29.0 1.0 C74 C:COY601 3.1 43.3 1.0 C10 C:COY601 3.2 34.9 1.0 C5 C:COY601 3.2 35.5 1.0 C15 C:COY601 3.2 33.9 1.0 C9B C:COY601 3.5 51.8 1.0 C2B C:COY601 3.6 50.2 1.0 C20 C:COY601 3.6 47.5 1.0 C4B C:COY601 3.8 43.0 1.0 C2 C:COY601 4.0 42.7 1.0 C18 C:COY601 4.0 41.1 1.0 C3 C:COY601 4.1 35.1 1.0 C13 C:COY601 4.1 30.7 1.0 C17 C:COY601 4.1 39.1 1.0 C12 C:COY601 4.1 31.7 1.0 C8 C:COY601 4.1 44.1 1.0 C7 C:COY601 4.2 37.8 1.0 C73 C:COY601 4.3 52.2 1.0 C26 C:COY601 4.4 35.4 1.0 C35 C:COY601 4.7 44.1 1.0 C8B C:COY601 4.7 52.8 1.0 N1B C:COY601 4.7 54.2 1.0 C42 C:COY601 4.7 53.0 1.0 C53 C:COY601 4.7 40.7 1.0 C48 C:COY601 4.8 41.2 1.0 C46 C:COY601 4.8 36.1 1.0 C54 C:COY601 4.9 40.5 1.0 C37 C:COY601 4.9 49.4 1.0

N.Shibata, H.Tamagaki, N.Hieda, K.Akita, H.Komori, Y.Shomura, S.Terawaki, K.Mori, N.Yasuoka, Y.Higuchi, T.Toraya. Crystal Structures of Ethanolamine Ammonia-Lyase Complexed with Coenzyme B12 Analogs and Substrates. J.Biol.Chem. V. 285 26484 2010.
ISSN: ISSN 0021-9258
PubMed: 20519496
DOI: 10.1074/JBC.M110.125112