Atomistry » Cobalt » PDB 2xwq-3bbi » 3ao0
Atomistry »
  Cobalt »
    PDB 2xwq-3bbi »
      3ao0 »

Cobalt in PDB 3ao0: Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol

Enzymatic activity of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol

All present enzymatic activity of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol:
4.3.1.7;

Protein crystallography data

The structure of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol, PDB code: 3ao0 was solved by N.Shibata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.00 / 2.25
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 243.850, 243.850, 76.806, 90.00, 90.00, 120.00
R / Rfree (%) 23.5 / 25.7

Other elements in 3ao0:

The structure of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol also contains other interesting chemical elements:

Sodium (Na) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol (pdb code 3ao0). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol, PDB code: 3ao0:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 3ao0

Go back to Cobalt Binding Sites List in 3ao0
Cobalt binding site 1 out of 2 in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co601

b:35.6
occ:1.00
CO B:B12601 0.0 35.6 1.0
N21 B:B12601 1.9 35.8 1.0
N24 B:B12601 1.9 38.4 1.0
N22 B:B12601 1.9 34.1 1.0
N23 B:B12601 1.9 31.6 1.0
N3B B:B12601 2.3 39.0 1.0
C19 B:B12601 2.8 37.3 1.0
C1 B:B12601 2.9 38.8 1.0
C14 B:B12601 2.9 31.8 1.0
C4 B:B12601 2.9 37.4 1.0
C9 B:B12601 2.9 30.7 1.0
C11 B:B12601 3.0 34.0 1.0
C16 B:B12601 3.0 34.9 1.0
C6 B:B12601 3.0 33.0 1.0
C9B B:B12601 3.3 38.4 1.0
C2B B:B12601 3.3 37.9 1.0
C10 B:B12601 3.4 30.3 1.0
C5 B:B12601 3.4 32.5 1.0
C15 B:B12601 3.4 31.5 1.0
C20 B:B12601 3.6 36.2 1.0
C4B B:B12601 3.7 43.9 1.0
C2 B:B12601 4.1 39.0 1.0
C18 B:B12601 4.1 39.5 1.0
C3 B:B12601 4.2 38.3 1.0
C13 B:B12601 4.2 32.3 1.0
C12 B:B12601 4.2 33.7 1.0
C8 B:B12601 4.3 33.7 1.0
C17 B:B12601 4.3 40.5 1.0
C7 B:B12601 4.3 35.5 1.0
N1B B:B12601 4.5 38.2 1.0
C8B B:B12601 4.5 40.1 1.0
C26 B:B12601 4.5 38.7 1.0
C42 B:B12601 4.7 32.4 1.0
C48 B:B12601 4.8 33.8 1.0
C53 B:B12601 4.9 28.5 1.0
C35 B:B12601 4.9 29.9 1.0
C46 B:B12601 5.0 33.8 1.0

Cobalt binding site 2 out of 2 in 3ao0

Go back to Cobalt Binding Sites List in 3ao0
Cobalt binding site 2 out of 2 in the Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Ethanolamine Ammonia-Lyase From Escherichia Coli Complexed with Cn-Cbl and (S)-2-Amino-1-Propanol within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Co601

b:39.6
occ:1.00
CO D:B12601 0.0 39.6 1.0
N21 D:B12601 1.9 35.0 1.0
N24 D:B12601 1.9 38.5 1.0
N22 D:B12601 1.9 40.9 1.0
N23 D:B12601 1.9 37.3 1.0
N3B D:B12601 2.4 57.2 1.0
C19 D:B12601 2.8 39.0 1.0
C1 D:B12601 2.9 42.5 1.0
C14 D:B12601 2.9 38.3 1.0
C4 D:B12601 2.9 39.5 1.0
C9 D:B12601 2.9 38.5 1.0
C11 D:B12601 3.0 40.9 1.0
C16 D:B12601 3.0 38.0 1.0
C6 D:B12601 3.0 39.4 1.0
C10 D:B12601 3.3 41.5 1.0
C2B D:B12601 3.4 57.7 1.0
C5 D:B12601 3.4 37.6 1.0
C15 D:B12601 3.4 37.2 1.0
C9B D:B12601 3.4 58.8 1.0
C20 D:B12601 3.6 43.4 1.0
C4B D:B12601 3.9 59.0 1.0
C2 D:B12601 4.1 43.1 1.0
C18 D:B12601 4.1 41.7 1.0
C3 D:B12601 4.2 41.3 1.0
C13 D:B12601 4.2 41.4 1.0
C12 D:B12601 4.2 40.5 1.0
C8 D:B12601 4.3 42.5 1.0
C17 D:B12601 4.3 41.4 1.0
C7 D:B12601 4.3 43.4 1.0
N1B D:B12601 4.6 56.0 1.0
C42 D:B12601 4.6 42.3 1.0
C8B D:B12601 4.6 58.5 1.0
C26 D:B12601 4.6 44.7 1.0
C48 D:B12601 4.8 43.3 1.0
C35 D:B12601 4.9 36.0 1.0
C53 D:B12601 4.9 42.1 1.0

Reference:

N.Shibata, Y.Higuchi, T.Toraya. How Coenzyme B12-Dependent Ethanolamine Ammonia-Lyase Deals with Both Enantiomers of 2-Amino-1-Propanol As Substrates: Structure-Based Rationalization. Biochemistry V. 50 591 2011.
ISSN: ISSN 0006-2960
PubMed: 21142024
DOI: 10.1021/BI101696H
Page generated: Tue Jul 30 15:47:01 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy