Atomistry » Cobalt » PDB 3bbk-3ger » 3bul
Atomistry »
  Cobalt »
    PDB 3bbk-3ger »
      3bul »

Cobalt in PDB 3bul: E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227)

Enzymatic activity of E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227)

All present enzymatic activity of E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227):
2.1.1.13;

Protein crystallography data

The structure of E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227), PDB code: 3bul was solved by M.Koutmos, K.A.Pattridge, M.L.Ludwig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.07 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.529, 106.529, 137.150, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.7

Cobalt Binding Sites:

The binding sites of Cobalt atom in the E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227) (pdb code 3bul). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227), PDB code: 3bul:

Cobalt binding site 1 out of 1 in 3bul

Go back to Cobalt Binding Sites List in 3bul
Cobalt binding site 1 out of 1 in the E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of E. Coli I690C/G743C Meth C-Terminal Fragment (649-1227) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1301

b:25.5
occ:1.00
CO A:B121301 0.0 25.5 1.0
N21 A:B121301 1.9 26.7 1.0
N23 A:B121301 1.9 28.5 1.0
N22 A:B121301 1.9 27.2 1.0
N24 A:B121301 1.9 26.6 1.0
C19 A:B121301 2.8 28.9 1.0
C4 A:B121301 2.8 30.2 1.0
C1 A:B121301 2.9 29.8 1.0
C9 A:B121301 2.9 21.2 1.0
C11 A:B121301 2.9 25.5 1.0
C14 A:B121301 2.9 28.7 1.0
C6 A:B121301 2.9 24.9 1.0
C16 A:B121301 3.0 26.2 1.0
C10 A:B121301 3.2 21.3 1.0
C5 A:B121301 3.3 26.6 1.0
C15 A:B121301 3.4 27.6 1.0
C20 A:B121301 3.6 27.3 1.0
C2 A:B121301 4.0 33.0 1.0
C3 A:B121301 4.1 33.1 1.0
C18 A:B121301 4.1 32.1 1.0
C13 A:B121301 4.2 26.4 1.0
C8 A:B121301 4.2 22.4 1.0
C17 A:B121301 4.2 31.6 1.0
C7 A:B121301 4.2 26.8 1.0
C12 A:B121301 4.3 26.9 1.0
C49 A:B121301 4.5 43.0 1.0
OH A:TYR1139 4.5 36.1 1.0
C26 A:B121301 4.5 36.7 1.0
C35 A:B121301 4.8 20.0 1.0
C37 A:B121301 4.8 24.9 1.0
CE1 A:TYR1139 4.9 30.7 1.0
C30 A:B121301 4.9 34.1 1.0
C53 A:B121301 4.9 25.9 1.0
CD2 A:LEU806 4.9 37.9 1.0
C41 A:B121301 4.9 14.5 1.0
CD1 A:LEU806 4.9 37.4 1.0
C48 A:B121301 5.0 32.8 1.0
C46 A:B121301 5.0 22.5 1.0
C54 A:B121301 5.0 33.2 1.0

Reference:

S.Datta, M.Koutmos, K.A.Pattridge, M.L.Ludwig, R.G.Matthews. A Disulfide-Stabilized Conformer of Methionine Synthase Reveals An Unexpected Role For the Histidine Ligand of the Cobalamin Cofactor. Proc.Natl.Acad.Sci.Usa V. 105 4115 2008.
ISSN: ISSN 0027-8424
PubMed: 18332423
DOI: 10.1073/PNAS.0800329105
Page generated: Tue Jul 30 15:51:03 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy