Chemical elements
  Cobalt
    Isotopes
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    Production
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    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
      362d
      376d
      379d
      3a3w
      3a3x
      3a4j
      3a9i
      3abo
      3abq
      3abr
      3abs
      3alq
      3az4
      3az6
      3b58
      3b5a
      3b5f
      3b5s
      3b91
      3bbi
      3bbk
      3bbm
      3bd5
      3bfq
      3bnl
      3bnt
      3bul
      3c86
      3cak
      3ci1
      3ci3
      3ci4
      3cla
      3cqs
      3cs2
      3cun
      3d03
      3dj4
      3ds7
      3dwc
      3e3h
      3ezx
      3f30
      3f4c
      3f4d
      3far
      3fl6
      3fo4
      3fo6
      3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of Phosphorylation of Self-Peptides Alters Human Leukocyte Antigen Class I-Restricted Antigen Presentation and Generates Tumor Specific Epitopes (pdb 3fqw)






The binding sites of Cobalt atom in the structure of Phosphorylation of Self-Peptides Alters Human Leukocyte Antigen Class I-Restricted Antigen Presentation and Generates Tumor Specific Epitopes (pdb code 3fqw). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 3fqw structure was solved by J.PETERSEN, J.ROSSJOHN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)23.7-1.9
Space groupP212121
a (A)59.982
b (A)79.378
c (A)111.292
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)16.9
Rfree (%)19.6


Cobalt Binding Sites:

Cobalt binding site 1 out of 1 in 3fqw


Cobalt binding site 1 out of 1 in 3fqw
Click to enlarge
stereopicture of Cobalt binding site 1 out of 1 in 3fqw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 3fqw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His50, B: Hoh101, B: Hoh290, B: Hoh318, B: Hoh319,

conact list:


AtomAtomDistance (A)
CoNE2 B:His502.26
CoND1 B:His504.33
CoCD2 B:His503.21
CoCE1 B:His503.23
CoCG B:His504.36
CoO B:Hoh1014.43
CoO B:Hoh2901.91
CoO B:Hoh3182.84
CoO B:Hoh3192.27

interactive model:




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