Cobalt in PDB 3ft6: Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex

The structure of Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex, PDB code: 3ft6 was solved by T.Maehigashi, O.Persil, N.V.Hud, L.D.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.53 / 1.12
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	24.563, 24.563, 78.276, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 21.9

The binding sites of Cobalt atom in the Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex (pdb code 3ft6). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex, PDB code: 3ft6:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Co31 b:13.4 occ:0.70 CO A:NCO31 0.0 13.4 0.7 N1 A:NCO31 2.0 16.4 0.7 N6 A:NCO31 2.0 16.2 0.7 N4 A:NCO31 2.0 17.7 0.7 N2 A:NCO31 2.0 17.8 0.7 N5 A:NCO31 2.0 16.4 0.7 N3 A:NCO31 2.0 15.8 0.7 OP1 A:DA3 4.0 18.4 1.0 O A:HOH107 4.3 29.7 1.0

Cobalt binding site 2 out of 3 in the Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Co32 b:19.9 occ:0.50 CO A:NCO32 0.0 19.9 0.5 O A:HOH33 1.5 10.3 0.5 N2 A:NCO32 2.0 20.6 0.5 N4 A:NCO32 2.0 21.3 0.5 N6 A:NCO32 2.0 22.2 0.5 N3 A:NCO32 2.0 20.1 0.5 N5 A:NCO32 2.0 21.7 0.5 N1 A:NCO32 2.0 20.8 0.5 O B:HOH119 3.9 31.6 1.0 N7 A:DG2 4.0 12.9 1.0 O6 A:DG2 4.5 12.5 1.0 O4 B:DT4 4.6 12.8 1.0 C8 A:DG2 4.9 12.7 1.0 C5 A:DG2 4.9 11.6 1.0 N15 A:PRL21 5.0 17.1 1.0

Cobalt binding site 3 out of 3 in the Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Co32 b:19.0 occ:0.50 CO B:NCO32 0.0 19.0 0.5 O B:HOH33 1.5 10.7 0.5 N2 B:NCO32 2.0 21.3 0.5 N4 B:NCO32 2.0 21.4 0.5 N3 B:NCO32 2.0 20.2 0.5 N6 B:NCO32 2.0 20.2 0.5 N5 B:NCO32 2.0 20.0 0.5 N1 B:NCO32 2.0 19.8 0.5 O B:HOH133 3.9 22.2 0.5 N7 B:DG2 3.9 13.1 1.0 O6 B:DG2 4.4 12.3 1.0 O4 A:DT4 4.5 13.2 1.0 C5 B:DG2 4.8 11.7 1.0 C8 B:DG2 4.9 13.7 1.0 N16 B:PRL22 5.0 16.8 1.0 O B:HOH118 5.0 32.0 1.0 C6 B:DG2 5.0 12.0 1.0

T.Maehigashi, O.Persil, N.V.Hud, L.D.Williams. Crystal Structure of Proflavine in Complex with A Dna Hexamer Duplex To Be Published.