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Cobalt in PDB 3ggd: Crystal Structure of Sam-Dependent Methyltransferase (YP_325210.1) From Anabaena Variabilis Atcc 29413 at 2.11 A Resolution

Protein crystallography data

The structure of Crystal Structure of Sam-Dependent Methyltransferase (YP_325210.1) From Anabaena Variabilis Atcc 29413 at 2.11 A Resolution, PDB code: 3ggd was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.08 / 2.11
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 112.520, 112.520, 112.560, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 17.5

Other elements in 3ggd:

The structure of Crystal Structure of Sam-Dependent Methyltransferase (YP_325210.1) From Anabaena Variabilis Atcc 29413 at 2.11 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Sam-Dependent Methyltransferase (YP_325210.1) From Anabaena Variabilis Atcc 29413 at 2.11 A Resolution (pdb code 3ggd). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Sam-Dependent Methyltransferase (YP_325210.1) From Anabaena Variabilis Atcc 29413 at 2.11 A Resolution, PDB code: 3ggd:

Cobalt binding site 1 out of 1 in 3ggd

Go back to Cobalt Binding Sites List in 3ggd
Cobalt binding site 1 out of 1 in the Crystal Structure of Sam-Dependent Methyltransferase (YP_325210.1) From Anabaena Variabilis Atcc 29413 at 2.11 A Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Sam-Dependent Methyltransferase (YP_325210.1) From Anabaena Variabilis Atcc 29413 at 2.11 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co246

b:49.6
occ:1.00
OD2 A:ASP209 2.0 57.2 1.0
NE2 A:HIS243 2.1 54.4 1.0
N1 A:IMD249 2.1 50.6 1.0
CD2 A:HIS243 2.8 55.0 1.0
CG A:ASP209 3.0 58.0 1.0
C5 A:IMD249 3.0 49.9 1.0
C2 A:IMD249 3.2 50.7 1.0
CE1 A:HIS243 3.2 53.5 1.0
CB A:ASP209 3.2 58.2 1.0
CG A:HIS243 4.1 56.0 1.0
OD1 A:ASP209 4.1 57.9 1.0
ND1 A:HIS243 4.2 53.0 1.0
C4 A:IMD249 4.2 47.5 1.0
NE A:ARG149 4.2 59.5 1.0
N3 A:IMD249 4.2 54.5 1.0
CD A:ARG149 4.4 56.5 1.0
CA A:ASP209 4.7 58.7 1.0
O A:ASP209 4.8 59.1 1.0
CG A:ARG149 5.0 55.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 30 16:04:16 2024

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