Cobalt in PDB 3gs1: An All-Rna Hairpin Ribozyme with Mutation A38N1DA

The structure of An All-Rna Hairpin Ribozyme with Mutation A38N1DA, PDB code: 3gs1 was solved by R.C.Spitale, R.Volpini, M.G.Heller, J.Krucinska, G.Cristalli, J.E.Wedekind, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.39 / 2.85
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	93.790, 93.790, 130.080, 90.00, 90.00, 120.00
R / Rfree (%)	21.2 / 23.3

The binding sites of Cobalt atom in the An All-Rna Hairpin Ribozyme with Mutation A38N1DA (pdb code 3gs1). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the An All-Rna Hairpin Ribozyme with Mutation A38N1DA, PDB code: 3gs1:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the An All-Rna Hairpin Ribozyme with Mutation A38N1DA


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of An All-Rna Hairpin Ribozyme with Mutation A38N1DA within 5.0Å range: probe atom residue distance (Å) B Occ D:Co101 b:0.1 occ:1.00 CO D:NCO101 0.0 0.1 1.0 N4 D:NCO101 2.0 0.3 1.0 N5 D:NCO101 2.0 0.2 1.0 N3 D:NCO101 2.0 0.9 1.0 N2 D:NCO101 2.0 0.4 1.0 N6 D:NCO101 2.0 0.3 1.0 N1 D:NCO101 2.0 0.1 1.0 OP1 D:A40 3.6 87.8 1.0 OP2 D:U41 3.8 73.5 1.0 OP2 C:A20 4.0 93.0 1.0 N7 C:G21 4.2 71.3 1.0 P D:A40 4.5 86.5 1.0 OP2 D:A40 4.5 82.0 1.0 O6 C:G21 4.6 71.9 1.0

Cobalt binding site 2 out of 2 in the An All-Rna Hairpin Ribozyme with Mutation A38N1DA


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of An All-Rna Hairpin Ribozyme with Mutation A38N1DA within 5.0Å range: probe atom residue distance (Å) B Occ B:Co102 b:0.7 occ:1.00 CO B:NCO102 0.0 0.7 1.0 N4 B:NCO102 2.0 0.3 1.0 N5 B:NCO102 2.0 0.5 1.0 N3 B:NCO102 2.0 0.2 1.0 N2 B:NCO102 2.0 0.8 1.0 N6 B:NCO102 2.0 0.2 1.0 N1 B:NCO102 2.0 0.5 1.0 N7 B:G12 4.3 66.5 1.0 O6 B:G13 4.4 70.9 1.0 O6 B:G12 4.6 67.1 1.0

R.C.Spitale, R.Volpini, M.G.Heller, J.Krucinska, G.Cristalli, J.E.Wedekind. Identification of An Imino Group Indispensable For Cleavage By A Small Ribozyme. J.Am.Chem.Soc. V. 131 6093 2009.
ISSN: ISSN 0002-7863
PubMed: 19354216
DOI: 10.1021/JA900450H