Atomistry » Cobalt » PDB 3ges-3igy » 3gu2
Atomistry »
  Cobalt »
    PDB 3ges-3igy »
      3gu2 »

Cobalt in PDB 3gu2: Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase

Protein crystallography data

The structure of Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase, PDB code: 3gu2 was solved by R.Hawwa, S.Larsen, K.Ratia, A.Mesecar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.072, 61.072, 204.578, 90.00, 90.00, 120.00
R / Rfree (%) 22.1 / 28.4

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase (pdb code 3gu2). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase, PDB code: 3gu2:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 3gu2

Go back to Cobalt Binding Sites List in 3gu2
Cobalt binding site 1 out of 2 in the Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1

b:27.0
occ:1.00
NE2 A:HIS123 2.1 21.0 1.0
NE2 A:HIS121 2.2 21.4 1.0
OD1 A:ASP364 2.3 17.7 1.0
OQ2 A:KCX243 2.5 31.3 1.0
CE1 A:HIS123 2.9 22.6 1.0
O A:HOH9 3.0 22.3 1.0
CX A:KCX243 3.1 30.8 1.0
CG A:ASP364 3.1 17.7 1.0
OQ1 A:KCX243 3.1 28.1 1.0
CD2 A:HIS123 3.2 22.9 1.0
CE1 A:HIS121 3.2 20.7 1.0
CD2 A:HIS121 3.2 21.9 1.0
OD2 A:ASP364 3.4 22.2 1.0
CO A:CO2 3.4 32.4 1.0
O A:HOH46 4.1 29.5 1.0
ND1 A:HIS123 4.1 22.6 1.0
CG A:HIS123 4.2 23.2 1.0
CE1 A:HIS304 4.3 26.0 1.0
NZ A:KCX243 4.3 33.6 1.0
ND1 A:HIS121 4.3 21.3 1.0
NE2 A:HIS304 4.3 26.2 1.0
CG A:HIS121 4.4 23.0 1.0
CB A:ASP364 4.4 18.3 1.0
CB A:ALA167 4.8 19.9 1.0
CA A:ASP364 4.9 20.8 1.0
CE A:KCX243 4.9 32.7 1.0
O A:HOH671 5.0 50.8 1.0

Cobalt binding site 2 out of 2 in 3gu2

Go back to Cobalt Binding Sites List in 3gu2
Cobalt binding site 2 out of 2 in the Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Y97L/G100-/E101- Mutant in Organophosphorus Hydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co2

b:32.4
occ:1.00
OQ1 A:KCX243 1.8 28.1 1.0
NE2 A:HIS304 2.3 26.2 1.0
O A:HOH46 2.3 29.5 1.0
ND1 A:HIS276 2.3 28.6 1.0
O A:HOH671 2.5 50.8 1.0
CX A:KCX243 3.0 30.8 1.0
CD2 A:HIS304 3.2 26.1 1.0
CE1 A:HIS276 3.2 27.2 1.0
CE1 A:HIS304 3.3 26.0 1.0
CG A:HIS276 3.4 26.9 1.0
O A:HOH9 3.4 22.3 1.0
CO A:CO1 3.4 27.0 1.0
OQ2 A:KCX243 3.6 31.3 1.0
CB A:HIS276 3.7 25.8 1.0
NZ A:KCX243 4.0 33.6 1.0
OD2 A:ASP364 4.3 22.2 1.0
CG A:HIS304 4.3 24.3 1.0
ND1 A:HIS304 4.4 26.6 1.0
O A:HOH632 4.4 49.2 1.0
NE2 A:HIS276 4.4 28.1 1.0
NE2 A:HIS121 4.5 21.4 1.0
CD2 A:HIS276 4.5 28.3 1.0
CE1 A:HIS121 4.5 20.7 1.0
CA A:HIS276 4.6 24.3 1.0
NH1 A:ARG328 4.9 44.3 1.0
CG A:ASP364 4.9 17.7 1.0
OD1 A:ASP364 4.9 17.7 1.0

Reference:

R.Hawwa, S.D.Larsen, K.Ratia, A.D.Mesecar. Structure-Based and Random Mutagenesis Approaches Increase the Organophosphate-Degrading Activity of A Phosphotriesterase Homologue From Deinococcus Radiodurans. J.Mol.Biol. V. 393 36 2009.
ISSN: ISSN 0022-2836
PubMed: 19631223
DOI: 10.1016/J.JMB.2009.06.083
Page generated: Sun Dec 13 10:40:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy