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Cobalt in PDB 3hjh: A Rigid N-Terminal Clamp Restrains the Motor Domains of the Bacterial Transcription-Repair Coupling Factor

Protein crystallography data

The structure of A Rigid N-Terminal Clamp Restrains the Motor Domains of the Bacterial Transcription-Repair Coupling Factor, PDB code: 3hjh was solved by M.Murphy, P.Gong, K.Ralto, L.Manelyte, N.Savery, K.Theis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.03 / 1.95
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.062, 157.650, 35.964, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 25.7

Cobalt Binding Sites:

The binding sites of Cobalt atom in the A Rigid N-Terminal Clamp Restrains the Motor Domains of the Bacterial Transcription-Repair Coupling Factor (pdb code 3hjh). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the A Rigid N-Terminal Clamp Restrains the Motor Domains of the Bacterial Transcription-Repair Coupling Factor, PDB code: 3hjh:

Cobalt binding site 1 out of 1 in 3hjh

Go back to Cobalt Binding Sites List in 3hjh
Cobalt binding site 1 out of 1 in the A Rigid N-Terminal Clamp Restrains the Motor Domains of the Bacterial Transcription-Repair Coupling Factor


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of A Rigid N-Terminal Clamp Restrains the Motor Domains of the Bacterial Transcription-Repair Coupling Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co484

b:26.4
occ:0.50
O A:HOH517 2.0 28.9 1.0
O A:HOH499 2.1 33.4 1.0
NE2 A:HIS343 2.5 5.4 1.0
CD2 A:HIS343 3.4 10.8 1.0
CE1 A:HIS343 3.5 6.2 1.0
O A:HOH512 4.1 31.2 1.0
O A:LEU344 4.4 6.0 1.0
ND1 A:HIS343 4.6 4.5 1.0
CG A:HIS343 4.6 9.1 1.0
ND2 A:ASN352 4.6 3.1 1.0

Reference:

M.N.Murphy, P.Gong, K.Ralto, L.Manelyte, N.J.Savery, K.Theis. An N-Terminal Clamp Restrains the Motor Domains of the Bacterial Transcription-Repair Coupling Factor Mfd. Nucleic Acids Res. V. 37 6042 2009.
ISSN: ISSN 0305-1048
PubMed: 19700770
DOI: 10.1093/NAR/GKP680
Page generated: Tue Jul 30 16:08:48 2024

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