Cobalt in PDB 3ide: Structure of Ipnv Subviral Particle

The structure of Structure of Ipnv Subviral Particle, PDB code: 3ide was solved by F.Coulibaly, C.Chevalier, B.Delmas, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.75 / 3.35
Space group	I 2 3 1
Cell size a, b, c (Å), α, β, γ (°)	303.431, 303.431, 303.431, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 23.3

The structure of Structure of Ipnv Subviral Particle also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Cobalt atom in the Structure of Ipnv Subviral Particle (pdb code 3ide). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Structure of Ipnv Subviral Particle, PDB code: 3ide:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Ipnv Subviral Particle within 5.0Å range: probe atom residue distance (Å) B Occ A:Co443 b:73.8 occ:1.00 OD2 A:ASP27 2.1 68.8 1.0 CG A:ASP27 2.9 67.9 1.0 OD1 A:ASP27 3.1 69.8 1.0 OD2 A:ASP171 4.1 65.3 1.0 CB A:ASP27 4.4 65.2 1.0

Cobalt binding site 2 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of Ipnv Subviral Particle within 5.0Å range: probe atom residue distance (Å) B Occ C:Co443 b:61.4 occ:0.33 OD2 C:ASP27 2.1 74.5 1.0 CG C:ASP27 2.9 76.9 1.0 OD1 C:ASP27 3.0 82.5 1.0 OD2 C:ASP171 4.2 89.8 1.0 CB C:ASP27 4.4 72.0 1.0

Cobalt binding site 3 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Structure of Ipnv Subviral Particle within 5.0Å range: probe atom residue distance (Å) B Occ E:Co443 b:54.9 occ:0.33 OD2 E:ASP27 2.2 62.7 1.0 CG E:ASP27 2.9 65.7 1.0 OD1 E:ASP27 3.0 71.5 1.0 OD2 E:ASP171 4.2 75.4 1.0 CB E:ASP27 4.4 63.0 1.0

F.Coulibaly, C.Chevalier, B.Delmas, F.A.Rey. Crystal Structure of An Aquabirnavirus Particle: Insights Into Antigenic Diversity and Virulence Determinism J.Virol. V. 84 1792 2010.
ISSN: ISSN 0022-538X
PubMed: 20007275
DOI: 10.1128/JVI.01536-09