Atomistry » Cobalt » PDB 3ges-3igy » 3ide
Atomistry »
  Cobalt »
    PDB 3ges-3igy »
      3ide »

Cobalt in PDB 3ide: Structure of Ipnv Subviral Particle

Protein crystallography data

The structure of Structure of Ipnv Subviral Particle, PDB code: 3ide was solved by F.Coulibaly, C.Chevalier, B.Delmas, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.75 / 3.35
Space group I 2 3 1
Cell size a, b, c (Å), α, β, γ (°) 303.431, 303.431, 303.431, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 23.3

Other elements in 3ide:

The structure of Structure of Ipnv Subviral Particle also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Ipnv Subviral Particle (pdb code 3ide). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Structure of Ipnv Subviral Particle, PDB code: 3ide:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in 3ide

Go back to Cobalt Binding Sites List in 3ide
Cobalt binding site 1 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Ipnv Subviral Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co443

b:73.8
occ:1.00
OD2 A:ASP27 2.1 68.8 1.0
CG A:ASP27 2.9 67.9 1.0
OD1 A:ASP27 3.1 69.8 1.0
OD2 A:ASP171 4.1 65.3 1.0
CB A:ASP27 4.4 65.2 1.0

Cobalt binding site 2 out of 3 in 3ide

Go back to Cobalt Binding Sites List in 3ide
Cobalt binding site 2 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of Ipnv Subviral Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Co443

b:61.4
occ:0.33
OD2 C:ASP27 2.1 74.5 1.0
CG C:ASP27 2.9 76.9 1.0
OD1 C:ASP27 3.0 82.5 1.0
OD2 C:ASP171 4.2 89.8 1.0
CB C:ASP27 4.4 72.0 1.0

Cobalt binding site 3 out of 3 in 3ide

Go back to Cobalt Binding Sites List in 3ide
Cobalt binding site 3 out of 3 in the Structure of Ipnv Subviral Particle


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Structure of Ipnv Subviral Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Co443

b:54.9
occ:0.33
OD2 E:ASP27 2.2 62.7 1.0
CG E:ASP27 2.9 65.7 1.0
OD1 E:ASP27 3.0 71.5 1.0
OD2 E:ASP171 4.2 75.4 1.0
CB E:ASP27 4.4 63.0 1.0

Reference:

F.Coulibaly, C.Chevalier, B.Delmas, F.A.Rey. Crystal Structure of An Aquabirnavirus Particle: Insights Into Antigenic Diversity and Virulence Determinism J.Virol. V. 84 1792 2010.
ISSN: ISSN 0022-538X
PubMed: 20007275
DOI: 10.1128/JVI.01536-09
Page generated: Tue Jul 30 16:11:11 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy