Chemical elements
  Cobalt
    Isotopes
    Energy
    Production
    Preparation
    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
      3ft6
      3g4m
      3g5k
      3g5p
      3gah
      3gai
      3gaj
      3gao
      3gb4
      3ger
      3ges
      3ggd
      3gob
      3gog
      3got
      3gqa
      3gs1
      3gs5
      3gs8
      3gtf
      3gth
      3gti
      3gtx
      3gu1
      3gu2
      3gu9
      3gx4
      3gxk
      3h2w
      3h7j
      3h7y
      3h9a
      3hdi
      3hht
      3hjh
      3hs5
      3hs6
      3hs7
      3htw
      3i11
      3i14
      3i15
      3i2q
      3i2r
      3i2s
      3i2u
      3i8v
      3i8w
      3ide
      3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of Structure of Ipnv Subviral Particle (pdb 3ide)






The binding sites of Cobalt atom in the structure of Structure of Ipnv Subviral Particle (pdb code 3ide). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 3ide structure was solved by F.COULIBALY, C.CHEVALIER, B.DELMAS, F.A.REY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.8-3.4
Space groupI231
a (A)303.431
b (A)303.431
c (A)303.431
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)21.7
Rfree (%)23.3


Cobalt Binding Sites:

Cobalt binding site 1 out of 3 in 3ide


Cobalt binding site 1 out of 3 in 3ide
Click to enlarge
stereopicture of Cobalt binding site 1 out of 3 in 3ide
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 3ide. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp27, A: Asp171,

conact list:


AtomAtomDistance (A)
CoCB A:Asp274.38
CoOD2 A:Asp272.15
CoOD1 A:Asp273.08
CoCG A:Asp272.95
CoOD2 A:Asp1714.15

interactive model:


Cobalt binding site 2 out of 3 in 3ide


Cobalt binding site 2 out of 3 in 3ide
Click to enlarge
stereopicture of Cobalt binding site 2 out of 3 in 3ide
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 3ide. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asp27, C: Asp171,

conact list:


AtomAtomDistance (A)
CoCB C:Asp274.36
CoOD2 C:Asp272.12
CoOD1 C:Asp273.04
CoCG C:Asp272.92
CoOD2 C:Asp1714.20

interactive model:


Cobalt binding site 3 out of 3 in 3ide


Cobalt binding site 3 out of 3 in 3ide
Click to enlarge
stereopicture of Cobalt binding site 3 out of 3 in 3ide
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cobalt in the PDB 3ide. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Asp27, E: Asp171,

conact list:


AtomAtomDistance (A)
CoCB E:Asp274.39
CoOD2 E:Asp272.16
CoOD1 E:Asp273.03
CoCG E:Asp272.94
CoOD2 E:Asp1714.24

interactive model:




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