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Cobalt in PDB 3lln: Comparison Between the Orthorhombic An Tetragonal Form of the Heptamer Sequence D(Gcg(Xt)Gcg)/D(Cgcacgc).

Protein crystallography data

The structure of Comparison Between the Orthorhombic An Tetragonal Form of the Heptamer Sequence D(Gcg(Xt)Gcg)/D(Cgcacgc)., PDB code: 3lln was solved by K.Robeyns, P.Herdewijn, L.Van Meervelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.15 / 3.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 25.482, 25.482, 81.147, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / n/a

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Comparison Between the Orthorhombic An Tetragonal Form of the Heptamer Sequence D(Gcg(Xt)Gcg)/D(Cgcacgc). (pdb code 3lln). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Comparison Between the Orthorhombic An Tetragonal Form of the Heptamer Sequence D(Gcg(Xt)Gcg)/D(Cgcacgc)., PDB code: 3lln:

Cobalt binding site 1 out of 1 in 3lln

Go back to Cobalt Binding Sites List in 3lln
Cobalt binding site 1 out of 1 in the Comparison Between the Orthorhombic An Tetragonal Form of the Heptamer Sequence D(Gcg(Xt)Gcg)/D(Cgcacgc).


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Comparison Between the Orthorhombic An Tetragonal Form of the Heptamer Sequence D(Gcg(Xt)Gcg)/D(Cgcacgc). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co8

b:48.2
occ:0.50
CO A:NCO8 0.0 48.2 0.5
N1 A:NCO8 2.0 44.7 0.5
N4 A:NCO8 2.0 43.3 0.5
N5 A:NCO8 2.0 43.6 0.5
N3 A:NCO8 2.0 43.2 0.5
N6 A:NCO8 2.0 44.4 0.5
N2 A:NCO8 2.0 44.3 0.5
C5' A:DG5 4.5 72.0 1.0
O2 A:XTR4 4.5 81.8 1.0
O5' A:DG5 4.7 78.1 1.0
O4' A:DG5 4.7 67.8 1.0
C4' A:DG5 4.8 69.0 1.0

Reference:

K.Robeyns, P.Herdewijn, L.Van Meervelt. Comparison Between the Orthorhombic and Tetragonal Forms of the Heptamer Sequence D[Gcg(Xt)Gcg]/D(Cgcacgc) Acta Crystallogr.,Sect.F V. 66 1028 2010.
ISSN: ESSN 1744-3091
PubMed: 20823518
DOI: 10.1107/S1744309110031696
Page generated: Sun Dec 13 10:41:22 2020

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