Chemical elements
  Cobalt
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    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
      3igz
      3isq
      3iuh
      3iv9
      3iva
      3ivs
      3ivu
      3ixn
      3ka4
      3ka6
      3ka8
      3ka9
      3khb
      3khc
      3koi
      3kok
      3kol
      3kon
      3kow
      3kox
      3koy
      3koz
      3kp0
      3kp1
      3kq4
      3krg
      3krk
      3kyn
      3kyo
      3l0s
      3l48
      3lln
      3lmm
      3lqx
      3m4z
      3m59
      3m5a
      3m8d
      3mat
      3mcr
      3mgp
      3mgw
      3mr4
      3mz3
      3mz7
      3ngy
      3ngz
      3npq
      3nyk
      3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb

Cobalt in the structure of SET7/9 Y245A in Complex With TAF10-K189ME3 Peptide and Adohcy (pdb 3m5a)






The binding sites of Cobalt atom in the structure of SET7/9 Y245A in Complex With TAF10-K189ME3 Peptide and Adohcy (pdb code 3m5a). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 3m5a structure was solved by P.A.DEL RIZZO, J.-F.COUTURE, M.S.ROIKO, B.S.STRUNK, J.S.BRUNZELLE, L.M.DIRK, R.L.HOUTZ, R.C.TRIEVEL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.1-1.8
Space groupP3221
a (A)83.108
b (A)83.108
c (A)95.570
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)19.6
Rfree (%)21


Cobalt Binding Sites:

Cobalt binding site 1 out of 7 in 3m5a


Cobalt binding site 1 out of 7 in 3m5a
Click to enlarge
stereopicture of Cobalt binding site 1 out of 7 in 3m5a
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 3m5a. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Pro350, A: Glu351, A: Trp352,

conact list:


AtomAtomDistance (A)
CoCB A:Pro3504.32
CoC A:Pro3504.26
CoCA A:Pro3504.60
CoN A:Glu3513.28
CoC A:Glu3514.05
CoCB A:Glu3513.43
CoCA A:Glu3513.72
CoN A:Trp3523.49
CoCB A:Trp3524.53
CoCD1 A:Trp3523.92
CoCG A:Trp3524.60
CoCA A:Trp3524.56
CoNE1 A:Trp3524.93

interactive model:


Cobalt binding site 2 out of 7 in 3m5a


Cobalt binding site 2 out of 7 in 3m5a
Click to enlarge
stereopicture of Cobalt binding site 2 out of 7 in 3m5a
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 3m5a. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp150, A: Arg215, A: Thr240, A: Hoh99,

conact list:


AtomAtomDistance (A)
CoCB A:Asp1504.32
CoCA A:Asp1504.88
CoNE A:Arg2154.84
CoNH2 A:Arg2154.18
CoCG2 A:Thr2404.87
CoO A:Hoh993.89

interactive model:


Cobalt binding site 3 out of 7 in 3m5a


Cobalt binding site 3 out of 7 in 3m5a
Click to enlarge
stereopicture of Cobalt binding site 3 out of 7 in 3m5a
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cobalt in the PDB 3m5a. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Pro238, A: Arg323, A: Ala324,

conact list:


AtomAtomDistance (A)
CoCD A:Pro2384.74
CoCG A:Pro2384.72
CoCB A:Arg3233.75
CoCB A:Arg3233.81
CoCD A:Arg3234.56
CoC A:Arg3234.08
CoCG A:Arg3234.20
CoCA A:Arg3233.93
CoCA A:Arg3233.93
CoO A:Ala3244.94
CoN A:Ala3243.25
CoCB A:Ala3243.83
CoCA A:Ala3244.14

interactive model:


Cobalt binding site 4 out of 7 in 3m5a


Cobalt binding site 4 out of 7 in 3m5a
Click to enlarge
stereopicture of Cobalt binding site 4 out of 7 in 3m5a
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cobalt in the PDB 3m5a. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg152, A: Met173, A: Ser174, A: Thr175,

conact list:


AtomAtomDistance (A)
CoNH2 A:Arg1524.60
CoNH1 A:Arg1524.76
CoO A:Met1734.97
CoCB A:Ser1744.35
CoC A:Ser1744.28
CoCA A:Ser1743.95
CoO A:Thr1754.39
CoN A:Thr1753.67
CoCB A:Thr1754.85
CoCG2 A:Thr1754.97
CoOG1 A:Thr1754.11
CoCA A:Thr1754.73

interactive model:


Cobalt binding site 5 out of 7 in 3m5a


Cobalt binding site 5 out of 7 in 3m5a
Click to enlarge
stereopicture of Cobalt binding site 5 out of 7 in 3m5a
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cobalt in the PDB 3m5a. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp259, A: Trp260, B: Lys187,

conact list:


AtomAtomDistance (A)
CoC A:Asp2594.50
CoCB A:Asp2594.58
CoCA A:Asp2594.21
CoN A:Trp2603.73
CoCB A:Trp2604.32
CoCD1 A:Trp2603.82
CoCG A:Trp2604.45
CoCA A:Trp2604.65
CoNE1 A:Trp2604.90
CoCE B:Lys1875.00
CoNZ B:Lys1873.96

interactive model:


Cobalt binding site 6 out of 7 in 3m5a


Cobalt binding site 6 out of 7 in 3m5a
Click to enlarge
stereopicture of Cobalt binding site 6 out of 7 in 3m5a
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cobalt in the PDB 3m5a. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His283, A: Val284, A: Ser285, A: Hoh60,

conact list:


AtomAtomDistance (A)
CoCB A:His2834.09
CoND1 A:His2833.85
CoC A:His2834.69
CoCE1 A:His2834.95
CoCG A:His2834.42
CoCA A:His2834.55
CoN A:Val2844.31
CoN A:Ser2854.10
CoCB A:Ser2854.16
CoOG A:Ser2853.75
CoCA A:Ser2854.78
CoO A:Hoh603.54

interactive model:


Cobalt binding site 7 out of 7 in 3m5a


Cobalt binding site 7 out of 7 in 3m5a
Click to enlarge
stereopicture of Cobalt binding site 7 out of 7 in 3m5a
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Cobalt in the PDB 3m5a. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asn282, A: His283,

conact list:


AtomAtomDistance (A)
CoND2 A:Asn2824.51
CoOD1 A:Asn2824.88
CoNE2 A:His2832.08
CoND1 A:His2834.01
CoCD2 A:His2833.28
CoCE1 A:His2832.79
CoCG A:His2834.27

interactive model:




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