Cobalt in PDB 3m8d: Crystal Structure of Spin-Labeled Btub V10R1 with Bound Calcium and Cyanocobalamin

The structure of Crystal Structure of Spin-Labeled Btub V10R1 with Bound Calcium and Cyanocobalamin, PDB code: 3m8d was solved by D.M.Freed, P.S.Horanyi, M.C.Wiener, D.S.Cafiso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.04 / 2.44
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	82.051, 82.051, 224.457, 90.00, 90.00, 120.00
R / Rfree (%)	22.6 / 27.5

The structure of Crystal Structure of Spin-Labeled Btub V10R1 with Bound Calcium and Cyanocobalamin also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

The binding sites of Cobalt atom in the Crystal Structure of Spin-Labeled Btub V10R1 with Bound Calcium and Cyanocobalamin (pdb code 3m8d). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Spin-Labeled Btub V10R1 with Bound Calcium and Cyanocobalamin, PDB code: 3m8d:

Cobalt binding site 1 out of 1 in the Crystal Structure of Spin-Labeled Btub V10R1 with Bound Calcium and Cyanocobalamin


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Spin-Labeled Btub V10R1 with Bound Calcium and Cyanocobalamin within 5.0Å range: probe atom residue distance (Å) B Occ A:Co701 b:62.0 occ:1.00 CO A:CNC701 0.0 62.0 1.0 N24 A:CNC701 1.8 59.2 1.0 N21 A:CNC701 1.8 60.4 1.0 C1A A:CNC701 1.8 70.7 1.0 N23 A:CNC701 1.8 61.4 1.0 N22 A:CNC701 1.8 58.5 1.0 N3B A:CNC701 2.4 54.1 1.0 C19 A:CNC701 2.6 59.2 1.0 C1 A:CNC701 2.7 60.0 1.0 C4 A:CNC701 2.8 59.3 1.0 C6 A:CNC701 2.8 59.4 1.0 C14 A:CNC701 2.8 62.3 1.0 C11 A:CNC701 2.8 62.3 1.0 C16 A:CNC701 2.9 61.0 1.0 C9 A:CNC701 2.9 61.1 1.0 N1A A:CNC701 3.0 73.1 1.0 C5 A:CNC701 3.2 59.9 1.0 C10 A:CNC701 3.2 62.3 1.0 C15 A:CNC701 3.3 61.7 1.0 C2B A:CNC701 3.3 54.1 1.0 C20 A:CNC701 3.4 61.2 1.0 C9B A:CNC701 3.5 51.8 1.0 C18 A:CNC701 3.9 60.8 1.0 C2 A:CNC701 4.0 61.5 1.0 C4B A:CNC701 4.0 56.1 1.0 C3 A:CNC701 4.0 60.0 1.0 C17 A:CNC701 4.1 60.9 1.0 C13 A:CNC701 4.1 65.4 1.0 C7 A:CNC701 4.2 62.0 1.0 C8 A:CNC701 4.2 60.7 1.0 C12 A:CNC701 4.2 65.6 1.0 N1B A:CNC701 4.5 54.3 1.0 C26 A:CNC701 4.5 62.0 1.0 C8B A:CNC701 4.6 53.9 1.0 C35 A:CNC701 4.7 52.3 1.0 C48 A:CNC701 4.7 69.4 1.0 C37 A:CNC701 4.8 63.0 1.0 C53 A:CNC701 4.8 55.9 1.0 C54 A:CNC701 4.8 56.8 1.0 C30 A:CNC701 4.9 58.3 1.0 C46 A:CNC701 5.0 67.3 1.0 C41 A:CNC701 5.0 63.4 1.0

D.M.Freed, P.S.Horanyi, M.C.Wiener, D.S.Cafiso. Conformational Exchange in A Membrane Transport Protein Is Altered in Protein Crystals. Biophys.J. V. 99 1604 2010.
ISSN: ISSN 0006-3495
PubMed: 20816073
DOI: 10.1016/J.BPJ.2010.06.026