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Cobalt in PDB 3r4q: Crystal Structure of Lactoylglutathione Lyase From Agrobacterium Tumefaciens

Protein crystallography data

The structure of Crystal Structure of Lactoylglutathione Lyase From Agrobacterium Tumefaciens, PDB code: 3r4q was solved by R.Agarwal, S.C.Almo, S.Swaminathan, New York Structural Genomicsresearch Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.42 / 2.51
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.530, 202.522, 50.907, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 29.6

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Lactoylglutathione Lyase From Agrobacterium Tumefaciens (pdb code 3r4q). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Lactoylglutathione Lyase From Agrobacterium Tumefaciens, PDB code: 3r4q:

Cobalt binding site 1 out of 1 in 3r4q

Go back to Cobalt Binding Sites List in 3r4q
Cobalt binding site 1 out of 1 in the Crystal Structure of Lactoylglutathione Lyase From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Lactoylglutathione Lyase From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co161

b:49.1
occ:0.50
OE1 A:GLU128 3.0 22.6 1.0
OH A:TYR118 3.0 22.1 1.0
O B:HOH186 3.3 27.0 1.0
OE2 A:GLU128 3.4 19.8 1.0
OE1 B:GLU11 3.5 21.6 1.0
CD A:GLU128 3.6 21.1 1.0
NE2 A:HIS79 3.8 18.9 1.0
CZ A:TYR118 4.1 21.5 1.0
CE2 A:TYR118 4.2 19.9 1.0
CE1 A:HIS79 4.3 18.6 1.0
CD B:GLU11 4.4 22.6 1.0
OE2 B:GLU11 4.4 21.8 1.0
CZ2 A:TRP110 4.6 18.4 1.0
CG2 B:ILE69 4.7 26.0 1.0
CH2 A:TRP110 4.8 18.6 1.0
CD2 A:HIS79 4.8 18.4 1.0
CD2 B:LEU53 5.0 13.6 1.0

Reference:

R.Agarwal, S.C.Almo, S.Swaminathan. Crystal Structure of Lactoylglutathione Lyase From Agrobacterium Tumefaciens To Be Published.
Page generated: Sun Dec 13 10:42:02 2020

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