Cobalt in PDB 3r86: Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2

The structure of Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2, PDB code: 3r86 was solved by S.Venkadesh, P.K.Mandal, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.37 / 2.80
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	32.756, 32.756, 93.648, 90.00, 90.00, 120.00
R / Rfree (%)	26 / 27

The binding sites of Cobalt atom in the Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2 (pdb code 3r86). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2, PDB code: 3r86:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co11 b:53.4 occ:1.00 O A:HOH13 2.2 32.4 1.0 C8 A:DG3 2.8 44.1 1.0 N7 A:DG3 3.0 20.2 1.0 N9 A:DG3 4.0 43.9 1.0 C5 A:DG3 4.3 16.8 1.0 C2' A:DC2 4.3 52.3 1.0 C2' A:DG3 4.4 39.8 1.0 O6 A:DG4 4.5 45.2 1.0 N7 A:DG4 4.6 39.3 1.0 C4 A:DG3 4.7 25.2 1.0 C1' A:DG3 4.7 39.4 1.0 OP2 A:DG3 5.0 64.9 1.0

Cobalt binding site 2 out of 3 in the Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Co11 b:46.9 occ:1.00 O B:HOH14 2.4 32.1 1.0 N7 B:DG3 2.5 39.9 1.0 C8 B:DG3 2.9 34.1 1.0 C5 B:DG3 3.8 42.4 1.0 O6 B:DG4 3.8 33.8 1.0 OP2 B:DG3 3.9 75.8 1.0 C2' B:DC2 4.1 44.2 1.0 N9 B:DG3 4.2 33.8 1.0 C6 B:DC2 4.6 31.9 1.0 C4 B:DG3 4.7 24.3 1.0 C6 B:DG3 4.7 56.9 1.0 O6 B:DG3 4.7 56.6 1.0 N7 B:DG4 4.7 31.8 1.0 C6 B:DG4 4.9 28.0 1.0 N1 B:DC2 4.9 33.3 1.0 C1' B:DC2 4.9 37.0 1.0 C5 B:DC2 5.0 49.6 1.0

Cobalt binding site 3 out of 3 in the Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex Grown with 5 Mm COCL2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Co12 b:56.8 occ:1.00 N7 B:DG9 2.6 29.1 1.0 O B:HOH15 2.8 37.9 1.0 O6 B:DG9 3.1 50.4 1.0 C5 B:DG9 3.4 34.0 1.0 C6 B:DG9 3.6 36.7 1.0 C8 B:DG9 3.7 54.5 1.0 C5 B:DC8 3.8 64.3 1.0 C6 B:DC8 4.3 70.6 1.0 C4 B:DC8 4.6 75.4 1.0 C4 B:DG9 4.7 48.2 1.0 N9 B:DG9 4.8 52.2 1.0 N4 B:DC8 4.9 75.0 1.0

S.Venkadesh, P.K.Mandal, N.Gautham. Crystal Structure of D(Ccggtaccgg)2 As B-Dna Duplex To Be Published.