Chemical elements
  Cobalt
    Isotopes
    Energy
    Production
    Preparation
    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
      3o0o
      3o53
      3oce
      3ojj
      3ojk
      3r61
      3req
      3rgt
      3ror
      3s5h
      3sxx
      3tcy
      3tgh
      3tzi
      3upm
      3ur2
      3ur5
      3ura
      3urb
      3urn
      3urq
      3v7e
      3v9s
      3v9u
      3v9w
      3v9z
      3va0
      3va3
      3vou
      3xim
      4a8n
      4afo
      4al3
      4ask
      4az4
      4cla
      4djd
      4dje
      4djf
      4e1g
      4era
      4f2x
      4f8g
      4f8i
      4fck
      4fe5
      4fyl
      4g6p
      4g6s
      4req
    PDB 4xim-9icb

Cobalt in the structure of Methylmalonyl-Coa Mutase, Substrate-Free State (Poor Quality Structure) (pdb 3req)






The binding sites of Cobalt atom in the structure of Methylmalonyl-Coa Mutase, Substrate-Free State (Poor Quality Structure) (pdb code 3req). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 3req structure was solved by P.R.EVANS, F.MANCIA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.7
Space groupP41212
a (A)110.910
b (A)110.910
c (A)257.740
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)31.3
Rfree (%)39.3


Cobalt Binding Sites:

Cobalt binding site 1 out of 1 in 3req


Cobalt binding site 1 out of 1 in 3req
Click to enlarge
stereopicture of Cobalt binding site 1 out of 1 in 3req
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 3req. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His610, A: B12800, A: Adn801,

conact list:


AtomAtomDistance (A)
CoNE2 A:His6102.47
CoND1 A:His6104.59
CoCD2 A:His6103.26
CoCE1 A:His6103.56
CoCG A:His6104.49
CoC18 A:B128004.09
CoC11 A:B128002.77
CoC1 A:B128002.92
CoC8 A:B128004.27
CoC2 A:B128004.19
CoC46 A:B128004.86
CoN22 A:B128001.97
CoC35 A:B128004.95
CoC17 A:B128004.19
CoN21 A:B128001.90
CoC12 A:B128004.01
CoC19 A:B128003.00
CoCO A:B128000.00
CoC15 A:B128003.13
CoC37 A:B128004.87
CoC16 A:B128002.86
CoC6 A:B128003.05
CoC5 A:B128003.42
CoC4 A:B128002.94
CoC10 A:B128003.21
CoC13 A:B128003.95
CoC20 A:B128003.49
CoC48 A:B128004.65
CoC9 A:B128002.92
CoC54 A:B128004.82
CoC14 A:B128002.63
CoN24 A:B128001.95
CoN23 A:B128001.67
CoC7 A:B128004.37
CoC53 A:B128004.61
CoC3 A:B128004.21
CoC26 A:B128004.50
CoC3' A:Adn8014.36
CoO3' A:Adn8014.79
CoO4' A:Adn8014.09
CoC5' A:Adn8012.03
CoC4' A:Adn8013.26

interactive model:




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