Cobalt in PDB 3ta5: Cobalt Bound Structure of An Archaeal Member of the Ligd 3'- Phosphoesterase Dna Repair Enzyme Family

The structure of Cobalt Bound Structure of An Archaeal Member of the Ligd 3'- Phosphoesterase Dna Repair Enzyme Family, PDB code: 3ta5 was solved by U.Das, P.Smith, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.57 / 1.52
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	27.740, 58.400, 33.050, 90.00, 102.55, 90.00
R / Rfree (%)	15.6 / 18.9

The binding sites of Cobalt atom in the Cobalt Bound Structure of An Archaeal Member of the Ligd 3'- Phosphoesterase Dna Repair Enzyme Family (pdb code 3ta5). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Cobalt Bound Structure of An Archaeal Member of the Ligd 3'- Phosphoesterase Dna Repair Enzyme Family, PDB code: 3ta5:

Cobalt binding site 1 out of 1 in the Cobalt Bound Structure of An Archaeal Member of the Ligd 3'- Phosphoesterase Dna Repair Enzyme Family


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Cobalt Bound Structure of An Archaeal Member of the Ligd 3'- Phosphoesterase Dna Repair Enzyme Family within 5.0Å range: probe atom residue distance (Å) B Occ A:Co200 b:13.7 occ:1.00 OD2 A:ASP17 2.0 10.3 1.0 O4 A:PO4118 2.1 25.9 1.0 NE2 A:HIS15 2.1 11.9 1.0 ND1 A:HIS9 2.2 11.1 1.0 O A:HOH204 2.4 31.9 1.0 O A:HOH201 2.5 30.4 1.0 CG A:ASP17 2.9 9.9 1.0 CE1 A:HIS9 3.0 10.3 1.0 CE1 A:HIS15 3.0 10.1 1.0 OD1 A:ASP17 3.1 12.9 1.0 CD2 A:HIS15 3.2 9.8 1.0 P A:PO4118 3.3 19.6 1.0 CG A:HIS9 3.3 12.4 1.0 O2 A:PO4118 3.7 25.3 1.0 CB A:HIS9 3.7 13.2 1.0 O A:HOH291 3.8 12.9 1.0 O3 A:PO4118 3.9 24.6 1.0 O A:HOH316 4.1 23.2 0.5 O A:HOH295 4.2 14.9 1.0 ND1 A:HIS15 4.2 12.3 1.0 NE2 A:HIS9 4.2 15.4 1.0 CB A:ASP17 4.3 8.4 1.0 CG A:HIS15 4.3 10.4 1.0 NH2 A:ARG19 4.3 9.3 1.0 CD2 A:HIS9 4.4 15.8 1.0 O A:HOH193 4.4 25.2 1.0 O1 A:PO4118 4.5 24.9 1.0 O A:HOH316 4.5 23.2 0.5

U.Das, P.Smith, S.Shuman. Structural Insights to the Metal Specificity of An Archaeal Member of the Ligd 3'-Phosphoesterase Dna Repair Enzyme Family. Nucleic Acids Res. V. 40 828 2012.
ISSN: ISSN 0305-1048
PubMed: 21965539
DOI: 10.1093/NAR/GKR767