Cobalt in PDB 3ut1: Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3

The structure of Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3, PDB code: 3ut1 was solved by N.Zhong, W.Tempel, A.K.Wernimont, S.Graslund, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, P.J.Brown, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.76 / 2.05
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	92.287, 70.619, 58.574, 90.00, 119.95, 90.00
R / Rfree (%)	22.2 / 26.7

The binding sites of Cobalt atom in the Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3 (pdb code 3ut1). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 5 binding sites of Cobalt where determined in the Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3, PDB code: 3ut1:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5;

Cobalt binding site 1 out of 5 in the Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1 b:31.0 occ:1.00 O A:HOH94 2.0 25.3 1.0 NE2 A:HIS503 2.2 28.4 1.0 O A:HOH93 2.2 28.8 1.0 NE2 A:HIS422 2.2 31.8 1.0 O A:HOH63 2.3 19.2 1.0 CD2 A:HIS422 3.1 29.6 1.0 CD2 A:HIS503 3.1 27.6 1.0 CE1 A:HIS503 3.2 30.1 1.0 CE1 A:HIS422 3.3 28.5 1.0 CG A:HIS422 4.3 28.6 1.0 CG A:HIS503 4.3 29.5 1.0 ND1 A:HIS503 4.3 32.3 1.0 ND1 A:HIS422 4.4 29.6 1.0 CD A:ARG504 4.4 26.1 1.0 OD1 A:ASP521 4.5 30.9 1.0 CG A:ARG504 4.8 24.1 1.0

Cobalt binding site 2 out of 5 in the Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co2 b:63.7 occ:1.00 NE2 A:HIS404 2.3 26.9 1.0 O A:HOH100 2.7 43.0 1.0 CE1 A:HIS404 3.2 26.0 1.0 CD2 A:HIS404 3.3 26.2 1.0 N A:ASN407 3.6 32.2 1.0 O A:TRP408 4.1 32.5 1.0 CA A:ASN407 4.3 33.7 1.0 ND1 A:HIS404 4.3 27.7 1.0 CA A:ASP406 4.4 28.5 1.0 CG A:HIS404 4.5 26.0 1.0 O A:PHE405 4.5 24.2 1.0 C A:ASP406 4.5 32.1 1.0 N A:TRP408 4.8 33.8 1.0 C A:ASN407 4.9 34.4 1.0

Cobalt binding site 3 out of 5 in the Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co3 b:73.9 occ:1.00 NE2 A:HIS432 2.5 36.6 1.0 CE1 A:HIS432 3.1 34.1 1.0 CD2 A:HIS432 3.7 36.6 1.0 NE1 A:TRP428 3.8 22.9 1.0 ND1 A:HIS432 4.4 33.2 1.0 CD1 A:TRP428 4.5 22.1 1.0 CE2 A:TRP428 4.7 23.1 1.0 CG A:HIS432 4.7 35.1 1.0

Cobalt binding site 4 out of 5 in the Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co4 b:72.3 occ:1.00 NE2 A:HIS330 2.2 35.8 1.0 CE1 A:HIS330 3.0 33.9 1.0 CD2 A:HIS330 3.3 35.5 1.0 ND1 A:HIS330 4.2 34.8 1.0 CG A:HIS330 4.3 35.3 1.0 UNK A:UNX8 4.7 30.0 1.0 OH A:TYR301 4.9 34.0 1.0

Cobalt binding site 5 out of 5 in the Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co5 b:88.3 occ:1.00 NE2 A:HIS277 2.8 42.9 1.0 CE1 A:HIS277 2.9 41.6 1.0 CD2 A:HIS277 4.1 39.6 1.0 ND1 A:HIS277 4.2 40.0 1.0 CG A:HIS277 4.8 37.9 1.0

N.Zhong, W.Tempel, A.K.Wernimont, S.Graslund, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, P.J.Brown. Crystal Structure of the 3-Mbt Repeat Domain of L3MBTL3 To Be Published.