Cobalt in PDB 3vw3: Antibody 64M-5 Fab in Complex with A Double-Stranded Dna (6-4) Photoproduct

The structure of Antibody 64M-5 Fab in Complex with A Double-Stranded Dna (6-4) Photoproduct, PDB code: 3vw3 was solved by H.Yokoyama, R.Mizutani, Y.Satow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.26 / 2.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	68.430, 68.430, 243.658, 90.00, 90.00, 90.00
R / Rfree (%)	24.7 / 29

The binding sites of Cobalt atom in the Antibody 64M-5 Fab in Complex with A Double-Stranded Dna (6-4) Photoproduct (pdb code 3vw3). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Antibody 64M-5 Fab in Complex with A Double-Stranded Dna (6-4) Photoproduct, PDB code: 3vw3:

Cobalt binding site 1 out of 1 in the Antibody 64M-5 Fab in Complex with A Double-Stranded Dna (6-4) Photoproduct


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Antibody 64M-5 Fab in Complex with A Double-Stranded Dna (6-4) Photoproduct within 5.0Å range: probe atom residue distance (Å) B Occ H:Co301 b:3.2 occ:1.00 CO H:NCO301 0.0 3.2 1.0 N4 H:NCO301 1.7 18.6 1.0 N3 H:NCO301 1.8 22.5 1.0 N6 H:NCO301 1.8 38.4 1.0 N1 H:NCO301 1.8 28.4 1.0 N2 H:NCO301 1.8 20.0 1.0 N5 H:NCO301 1.8 21.6 1.0 OG1 H:THR58 3.7 27.0 1.0 OP2 A:DA11 3.7 17.8 1.0 O H:THR57 3.8 32.8 1.0 OD1 H:ASP56 4.3 39.7 1.0 P A:DA11 4.8 34.8 1.0 OP1 A:DA11 4.9 21.9 1.0 CB H:THR58 5.0 14.9 1.0 C H:THR57 5.0 23.8 1.0

H.Yokoyama, R.Mizutani, Y.Satow. Structure of A Double-Stranded Dna (6-4) Photoproduct in Complex with the 64M-5 Antibody Fab Acta Crystallogr.,Sect.D V. 69 504 2013.
ISSN: ISSN 0907-4449
PubMed: 23519658
DOI: 10.1107/S0907444912050007