Cobalt in PDB 3vxm: The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide

The structure of The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide, PDB code: 3vxm was solved by A.Shimizu, S.Fukai, A.Yamagata, A.Iwamoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.117, 86.489, 234.580, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 26.7

The binding sites of Cobalt atom in the The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide (pdb code 3vxm). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide, PDB code: 3vxm:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide within 5.0Å range: probe atom residue distance (Å) B Occ D:Co301 b:46.6 occ:1.00 ND1 D:HIS10 2.1 24.5 1.0 CE1 D:HIS10 3.1 24.6 1.0 CG D:HIS10 3.1 24.2 1.0 CB D:HIS10 3.4 23.7 1.0 NE2 D:HIS10 4.2 24.3 1.0 CD2 D:HIS10 4.2 24.3 1.0 CA D:HIS10 4.9 24.1 1.0

Cobalt binding site 2 out of 3 in the The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide within 5.0Å range: probe atom residue distance (Å) B Occ E:Co301 b:55.7 occ:1.00 NE2 E:HIS153 1.9 49.2 1.0 NE2 E:HIS10 2.2 31.3 1.0 OE2 E:GLU155 2.4 48.1 1.0 CE1 E:HIS153 2.7 50.6 1.0 CD2 E:HIS153 3.0 47.6 1.0 CE1 E:HIS10 3.1 30.7 1.0 CD2 E:HIS10 3.2 29.8 1.0 CD E:GLU155 3.7 48.1 1.0 ND1 E:HIS153 3.8 49.4 1.0 CG E:HIS153 4.0 47.5 1.0 O E:HOH451 4.3 42.7 1.0 ND1 E:HIS10 4.3 29.6 1.0 CG E:HIS10 4.4 29.1 1.0 OE1 E:GLU155 4.5 48.5 1.0 CG E:GLU155 4.7 46.5 1.0 CE1 E:TYR214 4.9 33.9 1.0

Cobalt binding site 3 out of 3 in the The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of The Complex Between C1-28 Tcr and Hla-A24 Bound to Hiv-1 NEF134-10(2F) Peptide within 5.0Å range: probe atom residue distance (Å) B Occ E:Co302 b:62.0 occ:1.00 NE2 E:HIS26 2.2 38.0 1.0 OE2 E:GLU24 2.4 43.2 1.0 O E:HOH458 2.4 41.7 1.0 CD2 E:HIS26 2.8 35.2 1.0 O E:HOH459 2.9 40.0 1.0 CE1 E:HIS26 3.4 36.1 1.0 CD E:GLU24 3.6 40.3 1.0 CG E:HIS26 4.0 35.9 1.0 ND1 E:HIS26 4.3 37.2 1.0 CG E:GLU24 4.4 37.0 1.0 OE1 E:GLU24 4.5 39.5 1.0 OG1 E:THR5 4.9 30.3 1.0

A.Shimizu, A.Kawana-Tachikawa, A.Yamagata, C.Han, D.Zhu, Y.Sato, H.Nakamura, T.Koibuchi, J.Carlson, E.Martin, C.J.Brumme, Y.Shi, G.F.Gao, Z.L.Brumme, S.Fukai, A.Iwamoto. Structure of Tcr and Antigen Complexes at An Immunodominant Ctl Epitope in Hiv-1 Infection Sci Rep V. 3 3097 2013.
ISSN: ESSN 2045-2322
PubMed: 24192765
DOI: 10.1038/SREP03097