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Cobalt in PDB 3w1q: Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2

Enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2

All present enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2:
1.3.98.1;

Protein crystallography data

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2, PDB code: 3w1q was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.63 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.114, 71.886, 129.554, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 19

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2 (pdb code 3w1q). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2, PDB code: 3w1q:

Cobalt binding site 1 out of 1 in 3w1q

Go back to Cobalt Binding Sites List in 3w1q
Cobalt binding site 1 out of 1 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:9.3
occ:1.00
CO A:NCO402 0.0 9.3 1.0
N3 A:NCO402 2.0 10.0 1.0
N5 A:NCO402 2.0 10.2 1.0
N4 A:NCO402 2.0 9.7 1.0
N6 A:NCO402 2.0 9.5 1.0
N1 A:NCO402 2.0 9.9 1.0
N2 A:NCO402 2.1 9.8 1.0
O A:GLN275 3.9 7.2 1.0
O A:HOH735 4.0 19.9 1.0
O A:GLU276 4.2 8.7 1.0
O A:HOH743 4.3 27.1 1.0
O A:HOH559 4.4 18.1 1.0
O A:HOH757 4.4 30.4 1.0
O A:HOH655 4.4 30.4 1.0
O A:HOH762 4.4 25.5 1.0
C A:GLU276 4.8 7.9 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Nl-2 To Be Published.
Page generated: Sun Jul 13 19:32:33 2025

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