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Cobalt in PDB 3w7j: Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040

Enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040

All present enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040:
1.3.98.1;

Protein crystallography data

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040, PDB code: 3w7j was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Hashimoto, S.Matsuoka, T.Kuranaga, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.26 / 1.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.999, 71.693, 129.418, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 18.2

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040 (pdb code 3w7j). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040, PDB code: 3w7j:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 3w7j

Go back to Cobalt Binding Sites List in 3w7j
Cobalt binding site 1 out of 2 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co412

b:8.6
occ:1.00
CO A:NCO412 0.0 8.6 1.0
N4 A:NCO412 2.0 8.1 1.0
N1 A:NCO412 2.0 9.0 1.0
N2 A:NCO412 2.1 8.7 1.0
N5 A:NCO412 2.1 9.5 1.0
N6 A:NCO412 2.1 8.3 1.0
N3 A:NCO412 2.1 9.6 1.0
O A:GLN275 3.8 5.7 1.0
O A:HOH606 4.0 24.3 1.0
O A:GLU276 4.2 6.9 1.0
O A:HOH752 4.3 25.4 1.0
O A:HOH722 4.3 23.5 1.0
O A:HOH541 4.4 14.3 1.0
O A:HOH754 4.4 23.1 1.0
O A:HOH711 4.5 29.2 1.0
O A:HOH664 4.6 32.5 1.0
C A:GLU276 4.8 5.5 1.0

Cobalt binding site 2 out of 2 in 3w7j

Go back to Cobalt Binding Sites List in 3w7j
Cobalt binding site 2 out of 2 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co413

b:33.5
occ:1.00
CO A:NCO413 0.0 33.5 1.0
N4 A:NCO413 2.0 33.7 1.0
N3 A:NCO413 2.0 31.9 1.0
N5 A:NCO413 2.0 34.2 1.0
N2 A:NCO413 2.0 30.6 1.0
N6 A:NCO413 2.0 31.2 1.0
N1 A:NCO413 2.0 32.0 1.0
OD2 A:ASP203 4.4 14.3 1.0
OD1 A:ASP203 4.4 14.2 1.0
CG A:ASP203 4.6 12.2 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Hashimoto, S.Matsuoka, T.Kuranaga, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-6-040 To Be Published.
Page generated: Sun Dec 13 10:43:21 2020

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