Cobalt in PDB 3wtr: Crystal Structure of E. Coli Yfcm Bound to Co(II)

The structure of Crystal Structure of E. Coli Yfcm Bound to Co(II), PDB code: 3wtr was solved by K.Kobayashi, R.Ishii, R.Ishitani, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.82 / 1.96
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	124.289, 36.938, 37.544, 90.00, 101.27, 90.00
R / Rfree (%)	17 / 20.7

The binding sites of Cobalt atom in the Crystal Structure of E. Coli Yfcm Bound to Co(II) (pdb code 3wtr). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of E. Coli Yfcm Bound to Co(II), PDB code: 3wtr:

Cobalt binding site 1 out of 1 in the Crystal Structure of E. Coli Yfcm Bound to Co(II)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of E. Coli Yfcm Bound to Co(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co201 b:30.1 occ:0.36 NE2 A:HIS63 1.9 30.5 1.0 NE2 A:HIS59 2.0 34.7 1.0 O A:HOH302 2.2 37.5 1.0 O A:HOH353 2.2 35.0 1.0 OE1 A:GLU98 2.3 35.4 1.0 OE2 A:GLU98 2.5 38.7 1.0 CD A:GLU98 2.7 37.7 1.0 CE1 A:HIS59 2.7 33.9 1.0 CE1 A:HIS63 2.9 30.0 1.0 CD2 A:HIS63 2.9 30.6 1.0 CD2 A:HIS59 3.2 29.9 1.0 ND1 A:HIS59 3.9 30.8 1.0 ND1 A:HIS63 4.0 32.9 1.0 CG A:HIS63 4.1 29.1 1.0 CG A:GLU98 4.1 35.8 1.0 CG A:HIS59 4.2 29.5 1.0

K.Kobayashi, A.Katz, A.Rajkovic, R.Ishii, O.E.Branson, M.A.Freitas, R.Ishitani, M.Ibba, O.Nureki. The Non-Canonical Hydroxylase Structure of Yfcm Reveals A Metal Ion-Coordination Motif Required For Ef-P Hydroxylation Nucleic Acids Res. V. 42 12295 2014.
ISSN: ISSN 0305-1048
PubMed: 25274739
DOI: 10.1093/NAR/GKU898