Atomistry » Cobalt » PDB 3w72-4aq4 » 4a8n
Atomistry »
  Cobalt »
    PDB 3w72-4aq4 »
      4a8n »

Cobalt in PDB 4a8n: Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission

Enzymatic activity of Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission

All present enzymatic activity of Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission:
5.3.1.5;

Protein crystallography data

The structure of Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission, PDB code: 4a8n was solved by K.Decanniere, L.-D.Patino-Lopez, M.Sleutel, C.Evrard, C.Van De Weerdt, E.Haumont, J.A.Gavira, F.Otalora, D.Maes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.77 / 1.20
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.530, 98.070, 102.050, 90.00, 90.00, 90.00
R / Rfree (%) 10.998 / 12.788

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission (pdb code 4a8n). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission, PDB code: 4a8n:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 4a8n

Go back to Cobalt Binding Sites List in 4a8n
Cobalt binding site 1 out of 2 in the Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1390

b:11.0
occ:1.00
OE1 A:GLU217 2.1 15.2 1.0
OD2 A:ASP287 2.1 11.1 1.0
OE2 A:GLU181 2.1 13.0 1.0
OD2 A:ASP245 2.3 10.2 1.0
O1 A:GOL1389 2.4 10.5 1.0
O A:HOH2258 2.4 16.2 1.0
CD A:GLU181 3.1 9.5 1.0
CG A:ASP287 3.2 6.8 1.0
CD A:GLU217 3.3 7.8 1.0
OE1 A:GLU181 3.3 10.2 1.0
C1 A:GOL1389 3.4 12.6 1.0
CG A:ASP245 3.4 6.5 1.0
CB A:ASP287 3.7 5.8 1.0
O A:HOH2277 3.9 14.9 1.0
O A:HOH2303 4.0 11.8 1.0
CB A:ASP245 4.0 5.6 1.0
CE1 A:HIS220 4.1 13.7 1.0
CG A:GLU217 4.1 5.2 1.0
CB A:GLU217 4.2 4.6 1.0
OE2 A:GLU217 4.2 11.4 1.0
OD1 A:ASP287 4.3 6.8 1.0
OD1 A:ASP245 4.4 7.8 1.0
CG A:GLU181 4.4 7.6 1.0
NE2 A:HIS220 4.5 13.0 1.0
C2 A:GOL1389 4.7 9.3 1.0
ND2 A:ASN215 4.8 10.0 1.0
ND1 A:HIS220 4.8 9.1 1.0
CO A:CO1391 4.9 14.9 1.0

Cobalt binding site 2 out of 2 in 4a8n

Go back to Cobalt Binding Sites List in 4a8n
Cobalt binding site 2 out of 2 in the Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1391

b:14.9
occ:1.00
OE2 A:GLU217 2.0 11.4 1.0
O A:HOH2277 2.1 14.9 1.0
OD1 A:ASP255 2.2 14.0 1.0
OD1 A:ASP257 2.3 13.4 1.0
OD2 A:ASP255 2.3 15.3 1.0
NE2 A:HIS220 2.7 13.0 1.0
CG A:ASP255 2.7 12.2 1.0
CD A:GLU217 3.0 7.8 1.0
CD2 A:HIS220 3.2 8.2 1.0
CG A:ASP257 3.3 12.7 1.0
O A:HOH2261 3.4 32.6 1.0
OE1 A:GLU217 3.4 15.2 1.0
OD2 A:ASP257 3.5 18.9 1.0
CE1 A:HIS220 3.8 13.7 1.0
ND2 A:ASN247 4.0 5.9 1.0
CB A:ASP255 4.1 11.8 1.0
O A:HOH2305 4.1 10.7 1.0
CG A:GLU217 4.4 5.2 1.0
CG A:HIS220 4.4 6.0 1.0
O A:HOH2258 4.4 16.2 1.0
NZ A:LYS183 4.7 13.0 1.0
ND1 A:HIS220 4.7 9.1 1.0
CB A:ASP257 4.7 10.0 1.0
OD2 A:ASP287 4.7 11.1 1.0
CE A:LYS183 4.8 7.4 1.0
CO A:CO1390 4.9 11.0 1.0
CA A:ASP255 5.0 7.2 1.0

Reference:

K.Decanniere, L.-D.Patino-Lopez, M.Sleutel, C.Evrard, C.Van De Weerdt, E.Haumont, J.A.Gavira, F.Otalora, D.Maes. Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission To Be Published.
Page generated: Sun Dec 13 10:43:39 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy