Cobalt in PDB 4c8q: Crystal Structure of the Yeast LSM1-7-PAT1 Complex

The structure of Crystal Structure of the Yeast LSM1-7-PAT1 Complex, PDB code: 4c8q was solved by H.Sharif, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.420 / 3.70
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	258.687, 258.687, 47.103, 90.00, 90.00, 120.00
R / Rfree (%)	24.9 / 29.54

The binding sites of Cobalt atom in the Crystal Structure of the Yeast LSM1-7-PAT1 Complex (pdb code 4c8q). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of the Yeast LSM1-7-PAT1 Complex, PDB code: 4c8q:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of the Yeast LSM1-7-PAT1 Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Yeast LSM1-7-PAT1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Co1080 b:0.7 occ:1.00 NE C:ARG24 2.6 0.3 1.0 NH1 B:ARG68 2.7 0.1 1.0 NH2 C:ARG61 2.8 0.2 1.0 OE2 C:GLU46 3.2 0.9 1.0 CD C:ARG24 3.3 0.9 1.0 CZ C:ARG24 3.4 0.2 1.0 CD1 C:ILE48 3.5 0.8 1.0 OE2 B:GLU18 3.5 0.2 1.0 NH2 C:ARG24 3.6 0.7 1.0 CZ B:ARG68 3.8 0.7 1.0 CD C:GLU46 4.0 0.6 1.0 CZ C:ARG61 4.0 0.5 1.0 OE1 C:GLU46 4.1 0.4 1.0 CE2 B:TYR69 4.1 98.9 1.0 CG1 C:ILE48 4.3 0.9 1.0 CD B:ARG68 4.4 1.0 1.0 CG C:ARG24 4.4 0.3 1.0 NE B:ARG68 4.5 0.3 1.0 NH1 C:ARG24 4.5 0.5 1.0 OH B:TYR69 4.6 90.7 1.0 NH2 B:ARG68 4.6 0.1 1.0 OD1 B:ASP22 4.7 1.0 1.0 NE C:ARG61 4.7 0.0 1.0 CD B:GLU18 4.7 0.3 1.0 CZ B:TYR69 4.8 89.1 1.0 NH1 C:ARG61 5.0 0.2 1.0 CD2 B:TYR69 5.0 98.3 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of the Yeast LSM1-7-PAT1 Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of the Yeast LSM1-7-PAT1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Co1080 b:0.2 occ:1.00 OE1 H:GLU701 3.7 0.9 1.0 OG1 H:THR734 4.1 0.9 1.0 OE1 H:GLU730 4.1 0.5 1.0 OE2 H:GLU701 4.3 0.3 1.0 CD H:GLU701 4.4 0.1 1.0

H.Sharif, E.Conti. Architecture of the LSM1-7-PAT1 Complex: A Conserved Assembly in Eukaryotic Mrna Turnover Cell Rep. V. 5 283 2013.
ISSN: ISSN 2211-1247
PubMed: 24139796
DOI: 10.1016/J.CELREP.2013.10.004