Cobalt in PDB 4cv7: Crystal Structure of Rhodococcus Equi Vapb

The structure of Crystal Structure of Rhodococcus Equi Vapb, PDB code: 4cv7 was solved by C.Geerds, H.H.Niemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.40
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	83.820, 83.820, 49.130, 90.00, 90.00, 120.00
R / Rfree (%)	16.972 / 19.854

The binding sites of Cobalt atom in the Crystal Structure of Rhodococcus Equi Vapb (pdb code 4cv7). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Rhodococcus Equi Vapb, PDB code: 4cv7:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Rhodococcus Equi Vapb


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Rhodococcus Equi Vapb within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1198 b:23.9 occ:0.25 OD2 A:ASP116 2.0 22.6 0.3 NE2 A:HIS106 2.2 30.2 1.0 O A:HOH2025 2.8 22.3 0.2 CD2 A:HIS106 2.9 29.3 1.0 CG A:ASP116 2.9 20.4 0.3 OD1 A:ASP116 3.1 20.7 0.3 CE1 A:HIS106 3.3 30.2 1.0 OD2 A:ASP116 3.6 29.8 0.7 CG A:ASP116 3.9 22.8 0.7 O A:ALA197 4.1 71.1 1.0 CG A:HIS106 4.1 24.7 1.0 ND1 A:HIS106 4.3 29.3 1.0 OD1 A:ASP116 4.3 24.5 0.7 CB A:ASP116 4.3 18.3 0.3 CB A:ASP116 4.5 20.0 0.7 C A:ALA197 4.8 70.2 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Rhodococcus Equi Vapb


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Rhodococcus Equi Vapb within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1199 b:21.1 occ:0.25 O A:HOH2035 1.8 27.7 0.5 O A:HOH2037 1.8 22.1 0.5 O A:HOH2107 2.2 28.1 0.5 O A:HOH2103 2.5 25.2 0.2 OD2 A:ASP118 3.7 28.7 1.0 O A:ASP116 4.3 17.4 1.0 OG A:SER188 4.4 19.4 0.6 CA A:GLY189 4.6 14.7 1.0 OG A:SER190 4.8 21.2 1.0 CG A:ASP118 4.8 20.3 1.0 O A:SER188 5.0 17.7 1.0 N A:GLY189 5.0 13.8 1.0

C.Geerds, J.Wohlmann, A.Haas, H.H.Niemann. Structure of Rhodococcus Equi Virulence-Associated Protein B (Vapb) Reveals An Eight-Stranded Antiparallel [Beta]-Barrel Consisting of Two Greek-Key Motifs Acta Crystallogr.,Sect.F V. 70 866 2014.
ISSN: ISSN 1744-3091
PubMed: 25005079
DOI: 10.1107/S2053230X14009911