Cobalt in PDB 4d07: DYNLL2 Dynein Light Chain Binds to An Extended, Unstructured Linear Motif of Myosin 5A Tail

The structure of DYNLL2 Dynein Light Chain Binds to An Extended, Unstructured Linear Motif of Myosin 5A Tail, PDB code: 4d07 was solved by A.Bodor, L.Radnai, C.Hetenyi, P.Rapali, A.Lang, K.E.Kover, A.Perczel, W.Y.Wahlgren, G.Katona, L.Nyitray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	204.01 / 1.85
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	45.160, 45.160, 204.010, 90.00, 90.00, 120.00
R / Rfree (%)	19.303 / 23.3

The binding sites of Cobalt atom in the DYNLL2 Dynein Light Chain Binds to An Extended, Unstructured Linear Motif of Myosin 5A Tail (pdb code 4d07). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the DYNLL2 Dynein Light Chain Binds to An Extended, Unstructured Linear Motif of Myosin 5A Tail, PDB code: 4d07:

Cobalt binding site 1 out of 1 in the DYNLL2 Dynein Light Chain Binds to An Extended, Unstructured Linear Motif of Myosin 5A Tail


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of DYNLL2 Dynein Light Chain Binds to An Extended, Unstructured Linear Motif of Myosin 5A Tail within 5.0Å range: probe atom residue distance (Å) B Occ A:Co1090 b:30.8 occ:1.00 N A:SER-1 2.0 33.3 1.0 ND1 A:HIS0 2.0 31.6 1.0 N A:GLY-2 2.1 30.9 1.0 N A:HIS0 2.2 32.2 1.0 OE1 A:GLU30 2.2 25.1 1.0 O A:HOH2002 2.4 36.7 1.0 C A:GLY-2 2.8 32.9 1.0 CA A:GLY-2 2.9 32.7 1.0 CA A:SER-1 3.0 33.7 1.0 CE1 A:HIS0 3.0 32.4 1.0 C A:SER-1 3.0 33.6 1.0 CG A:HIS0 3.1 32.2 1.0 CD A:GLU30 3.3 24.0 1.0 CA A:HIS0 3.3 31.5 1.0 CB A:HIS0 3.4 31.7 1.0 OE2 A:GLU30 3.7 24.4 1.0 O A:GLY-2 4.0 32.9 1.0 N A:MET1 4.0 29.5 1.0 OG A:SER-1 4.0 37.2 1.0 CB A:SER-1 4.1 35.6 1.0 NE2 A:HIS0 4.1 32.9 1.0 C A:HIS0 4.1 30.6 1.0 CD2 A:HIS0 4.2 32.3 1.0 O A:SER-1 4.2 33.0 1.0 O A:GLU30 4.4 17.7 1.0 CG A:GLU30 4.5 22.1 1.0 CA A:GLU30 4.6 18.6 1.0 CB A:GLU30 4.7 20.3 1.0

A.Bodor, L.Radnai, C.Hetenyi, P.Rapali, A.Lang, K.E.Kover, A.Perczel, W.Y.Wahlgren, G.Katona, L.Nyitray. DYNLL2 Dynein Light Chain Binds to An Extended Linear Motif of Myosin 5A Tail That Has Structural Plasticity. Biochemistry 2014.
ISSN: ESSN 1520-4995
PubMed: 25312846
DOI: 10.1021/BI500574Z