Cobalt in PDB 4f8g: Three-Dimensional Dna Lattices with Non-Canonical Base Pairs

The structure of Three-Dimensional Dna Lattices with Non-Canonical Base Pairs, PDB code: 4f8g was solved by P.J.Paukstelis, S.E.Muser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.11 / 1.93
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	31.655, 44.820, 73.157, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 24.1

The binding sites of Cobalt atom in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs (pdb code 4f8g). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs, PDB code: 4f8g:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Three-Dimensional Dna Lattices with Non-Canonical Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Co101 b:21.4 occ:1.00 CO A:NCO101 0.0 21.4 1.0 N2 A:NCO101 2.0 20.1 1.0 N1 A:NCO101 2.0 20.4 1.0 N6 A:NCO101 2.0 19.4 1.0 N4 A:NCO101 2.0 20.6 1.0 N3 A:NCO101 2.0 20.4 1.0 N5 A:NCO101 2.0 20.1 1.0 OP1 A:DG7 3.9 19.6 1.0 O A:HOH245 3.9 39.2 1.0 OP2 A:DG8 4.0 19.0 1.0 O A:HOH201 4.0 26.8 1.0 O A:HOH217 4.1 35.0 1.0 O A:HOH215 4.4 20.6 1.0

Cobalt binding site 2 out of 2 in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Three-Dimensional Dna Lattices with Non-Canonical Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Co102 b:19.8 occ:1.00 CO A:NCO102 0.0 19.8 1.0 N4 A:NCO102 2.0 18.5 1.0 N5 A:NCO102 2.0 19.1 1.0 N2 A:NCO102 2.0 19.4 1.0 N3 A:NCO102 2.0 19.7 1.0 N6 A:NCO102 2.0 18.9 1.0 N1 A:NCO102 2.0 19.0 1.0 OP2 A:DG7 3.8 19.6 1.0 O A:HOH209 3.8 20.8 1.0 O A:HOH215 4.0 20.6 1.0 O6 A:DG8 4.1 17.2 1.0 O A:HOH225 4.2 29.2 1.0 N7 A:DG8 4.2 17.6 1.0 O A:HOH226 4.3 37.7 1.0 N7 A:DG7 4.7 17.3 1.0 C6 A:DG8 4.9 17.6 1.0 C5 A:DG8 4.9 17.6 1.0

S.E.Muser, P.J.Paukstelis. Three-Dimensional Dna Crystals with pH-Responsive Noncanonical Junctions. J.Am.Chem.Soc. V. 134 12557 2012.
ISSN: ISSN 0002-7863
PubMed: 22768973
DOI: 10.1021/JA3025033