Cobalt in PDB 4f8i: Three-Dimensional Dna Lattices with Non-Canonical Base Pairs

The structure of Three-Dimensional Dna Lattices with Non-Canonical Base Pairs, PDB code: 4f8i was solved by P.J.Paukstelis, S.E.Muser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	31.574, 44.836, 85.267, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 24.4

The binding sites of Cobalt atom in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs (pdb code 4f8i). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs, PDB code: 4f8i:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Three-Dimensional Dna Lattices with Non-Canonical Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Co101 b:16.4 occ:1.00 CO A:NCO101 0.0 16.4 1.0 N1 A:NCO101 2.0 14.7 1.0 N6 A:NCO101 2.0 15.2 1.0 N3 A:NCO101 2.0 14.5 1.0 N5 A:NCO101 2.0 14.7 1.0 N4 A:NCO101 2.0 14.9 1.0 N2 A:NCO101 2.0 14.4 1.0 O A:HOH245 3.7 30.9 1.0 OP1 A:DG7 3.9 16.1 1.0 OP2 A:DG8 4.0 16.4 1.0 O A:HOH201 4.0 16.3 1.0 O A:HOH217 4.2 24.6 1.0 O A:HOH215 4.5 14.1 1.0

Cobalt binding site 2 out of 2 in the Three-Dimensional Dna Lattices with Non-Canonical Base Pairs


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Three-Dimensional Dna Lattices with Non-Canonical Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Co102 b:15.8 occ:1.00 CO A:NCO102 0.0 15.8 1.0 N2 A:NCO102 2.0 16.0 1.0 N4 A:NCO102 2.0 15.0 1.0 N6 A:NCO102 2.0 15.5 1.0 N1 A:NCO102 2.0 15.8 1.0 N5 A:NCO102 2.0 15.6 1.0 N3 A:NCO102 2.0 15.8 1.0 OP2 A:DG7 3.6 16.7 1.0 O A:HOH209 3.8 13.8 1.0 O A:HOH215 3.9 14.1 1.0 O6 A:DG8 4.1 15.6 1.0 O A:HOH226 4.2 24.1 1.0 N7 A:DG8 4.2 15.5 1.0 O A:HOH225 4.2 24.8 1.0 N7 A:DG7 4.7 16.4 1.0 C6 A:DG8 4.8 16.0 1.0 C5 A:DG8 4.9 15.8 1.0 P A:DG7 5.0 15.7 1.0

S.E.Muser, P.J.Paukstelis. Three-Dimensional Dna Crystals with pH-Responsive Noncanonical Junctions. J.Am.Chem.Soc. V. 134 12557 2012.
ISSN: ISSN 0002-7863
PubMed: 22768973
DOI: 10.1021/JA3025033