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Cobalt in PDB 4g3p: Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3

Enzymatic activity of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3

All present enzymatic activity of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3:
2.3.1.157; 2.7.7.23;

Protein crystallography data

The structure of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3, PDB code: 4g3p was solved by P.A.Jagtap, S.K.Verma, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.86 / 2.47
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 77.470, 77.470, 277.500, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 24.1

Other elements in 4g3p:

The structure of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3 (pdb code 4g3p). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3, PDB code: 4g3p:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 4g3p

Go back to Cobalt Binding Sites List in 4g3p
Cobalt binding site 1 out of 2 in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co503

b:36.1
occ:1.00
OD2 A:ASP114 2.1 17.4 1.0
O1B A:UD1506 2.2 16.1 1.0
O A:HOH753 2.2 27.1 1.0
O A:HOH754 2.3 12.2 1.0
O2A A:UD1506 2.3 16.6 1.0
OD1 A:ASN239 2.3 20.3 1.0
CG A:ASN239 3.0 18.4 1.0
CG A:ASP114 3.0 14.4 1.0
ND2 A:ASN239 3.1 14.7 1.0
OD1 A:ASP114 3.3 13.1 1.0
PB A:UD1506 3.5 16.9 1.0
PA A:UD1506 3.5 17.3 1.0
NZ A:LYS26 3.8 20.3 1.0
O3A A:UD1506 3.8 14.6 1.0
O6' A:UD1506 4.1 13.9 1.0
O5' A:UD1506 4.2 17.3 1.0
C5B A:UD1506 4.3 18.0 1.0
O A:VAL238 4.3 18.7 1.0
CB A:ASP114 4.4 14.4 1.0
O5B A:UD1506 4.4 18.7 1.0
CB A:ASN239 4.4 17.7 1.0
O A:HOH601 4.5 13.6 1.0
O1' A:UD1506 4.5 17.0 1.0
O2B A:UD1506 4.5 18.4 1.0
O1A A:UD1506 4.7 17.3 1.0
C A:VAL238 4.7 17.0 1.0
C1' A:UD1506 4.8 17.9 1.0
CA A:ASN239 4.9 17.4 1.0
C5' A:UD1506 4.9 18.5 1.0
C3B A:UD1506 4.9 16.9 1.0
NH2 A:ARG19 5.0 24.6 1.0
N A:ASN239 5.0 17.3 1.0
N A:VAL238 5.0 17.2 1.0

Cobalt binding site 2 out of 2 in 4g3p

Go back to Cobalt Binding Sites List in 4g3p
Cobalt binding site 2 out of 2 in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co505

b:36.0
occ:0.33
OD2 A:ASP417 1.9 18.7 1.0
CG A:ASP417 2.9 21.5 1.0
OD1 A:ASP417 3.3 26.5 1.0
MG A:MG502 3.7 4.3 0.3
CB A:ASP417 4.3 17.2 1.0
O A:ASP417 4.7 18.3 1.0

Reference:

P.A.Jagtap, S.K.Verma, B.Prakash. Structural Snapshots of Glmu From Mycobacterium Tuberculosis To Be Published.
Page generated: Tue Jul 30 17:05:21 2024

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