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Cobalt in PDB 4g3s: Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2

Enzymatic activity of Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2

All present enzymatic activity of Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2:
2.3.1.157; 2.7.7.23;

Protein crystallography data

The structure of Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2, PDB code: 4g3s was solved by P.A.Jagtap, S.K.Verma, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.94 / 2.04
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 76.580, 76.580, 276.970, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 23

Other elements in 4g3s:

The structure of Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2 also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2 (pdb code 4g3s). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2, PDB code: 4g3s:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 4g3s

Go back to Cobalt Binding Sites List in 4g3s
Cobalt binding site 1 out of 2 in the Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co506

b:42.2
occ:0.80
O1B A:UD1501 2.0 17.9 1.0
O2A A:UD1501 2.1 33.2 1.0
OD2 A:ASP114 2.1 21.9 1.0
OD1 A:ASN239 2.2 19.4 1.0
O A:HOH959 2.3 20.0 1.0
O A:HOH958 2.3 17.9 1.0
CG A:ASP114 3.0 18.0 1.0
CG A:ASN239 3.1 19.3 1.0
PB A:UD1501 3.2 23.3 1.0
OD1 A:ASP114 3.2 20.1 1.0
PA A:UD1501 3.3 29.5 1.0
ND2 A:ASN239 3.4 16.5 1.0
O3A A:UD1501 3.4 21.7 1.0
NZ A:LYS26 3.7 22.2 1.0
O6' A:UD1501 3.8 20.6 1.0
O5' A:UD1501 4.2 21.0 1.0
O1' A:UD1501 4.3 19.3 1.0
O5B A:UD1501 4.3 23.6 1.0
O2B A:UD1501 4.3 26.0 1.0
C5B A:UD1501 4.3 22.7 1.0
CB A:ASP114 4.4 20.1 1.0
O A:VAL238 4.4 21.1 1.0
O1A A:UD1501 4.4 31.9 1.0
O1 A:POP503 4.5 25.8 0.5
CB A:ASN239 4.5 20.7 1.0
O A:HOH960 4.6 20.4 1.0
C1' A:UD1501 4.6 19.9 1.0
C A:VAL238 4.8 20.6 1.0
O3B A:UD1501 4.8 20.5 1.0
C5' A:UD1501 4.8 17.1 1.0
C3B A:UD1501 4.8 23.3 1.0
CA A:ASN239 4.8 21.5 1.0
N A:ASN239 4.9 19.2 1.0
NH2 A:ARG19 4.9 24.6 1.0
C6' A:UD1501 4.9 15.8 1.0
CE A:LYS26 5.0 26.3 1.0
N A:VAL238 5.0 18.1 1.0
C4B A:UD1501 5.0 25.1 1.0

Cobalt binding site 2 out of 2 in 4g3s

Go back to Cobalt Binding Sites List in 4g3s
Cobalt binding site 2 out of 2 in the Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Glmu From Mycobacterium Tuberculosis in Complex with Uridine-Diphosphate-N-Acetylglucosamine and Pyrophosphate Snapshot 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co507

b:41.1
occ:0.33
OD2 A:ASP417 2.2 28.5 1.0
O A:HOH924 2.8 45.1 1.0
CG A:ASP417 2.9 26.2 1.0
OD1 A:ASP417 2.9 23.4 1.0
MG A:MG504 3.3 12.0 0.3
O A:HOH847 3.5 29.1 1.0
CB A:ASP417 4.4 22.7 1.0
O A:ASP417 4.7 24.2 1.0
O A:HOH606 4.9 29.4 1.0

Reference:

P.A.Jagtap, S.K.Verma, B.Prakash. Structural Snapshots of Glmu From Mycobacterium Tuberculosis To Be Published.
Page generated: Sun Dec 13 10:44:24 2020

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