Atomistry » Cobalt » PDB 4fe5-4j0b » 4g87
Atomistry »
  Cobalt »
    PDB 4fe5-4j0b »
      4g87 »

Cobalt in PDB 4g87: Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1

Enzymatic activity of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1

All present enzymatic activity of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1:
2.3.1.157; 2.7.7.23;

Protein crystallography data

The structure of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1, PDB code: 4g87 was solved by P.A.Jagtap, S.K.Verma, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.84 / 2.03
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 77.000, 77.000, 276.730, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / 23.5

Other elements in 4g87:

The structure of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1 (pdb code 4g87). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1, PDB code: 4g87:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 4g87

Go back to Cobalt Binding Sites List in 4g87
Cobalt binding site 1 out of 2 in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co502

b:47.0
occ:1.00
O2B A:UD1505 2.0 21.1 1.0
O2A A:UD1505 2.0 29.3 1.0
OD2 A:ASP114 2.2 21.5 1.0
OD1 A:ASN239 2.3 16.5 1.0
O A:HOH684 2.3 18.9 1.0
O A:HOH635 2.3 18.7 1.0
CG A:ASP114 3.1 19.6 1.0
CG A:ASN239 3.2 16.0 1.0
PB A:UD1505 3.2 20.6 1.0
PA A:UD1505 3.2 28.7 1.0
O3A A:UD1505 3.3 21.0 1.0
OD1 A:ASP114 3.3 21.8 1.0
ND2 A:ASN239 3.4 16.2 1.0
NZ A:LYS26 3.6 24.1 1.0
O6' A:UD1505 3.8 20.3 1.0
O5B A:UD1505 4.2 24.6 1.0
O5' A:UD1505 4.2 19.4 1.0
O1' A:UD1505 4.3 20.9 1.0
O1B A:UD1505 4.3 24.7 1.0
O1A A:UD1505 4.3 27.7 1.0
C5B A:UD1505 4.4 20.4 1.0
O A:VAL238 4.4 18.1 1.0
CB A:ASP114 4.5 20.7 1.0
O2 A:POP506 4.5 27.5 0.8
CB A:ASN239 4.5 17.1 1.0
C1' A:UD1505 4.6 22.0 1.0
O A:HOH997 4.6 19.2 1.0
C A:VAL238 4.7 18.7 1.0
CE A:LYS26 4.7 23.5 1.0
O3B A:UD1505 4.8 18.6 1.0
CA A:ASN239 4.8 18.0 1.0
NH2 A:ARG19 4.8 20.9 1.0
C5' A:UD1505 4.8 20.1 1.0
C3B A:UD1505 4.9 19.9 1.0
N A:ASN239 4.9 17.0 1.0
N A:VAL238 4.9 18.1 1.0
C6' A:UD1505 5.0 14.5 1.0

Cobalt binding site 2 out of 2 in 4g87

Go back to Cobalt Binding Sites List in 4g87
Cobalt binding site 2 out of 2 in the Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Glmu From Mycobacterium Tuberculosis Snapshot 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co503

b:33.1
occ:0.33
OD2 A:ASP417 2.1 22.7 1.0
CG A:ASP417 2.9 21.8 1.0
OD1 A:ASP417 3.1 20.7 1.0
O A:HOH733 3.5 21.9 1.0
MG A:MG501 3.7 37.2 1.0
CB A:ASP417 4.3 18.4 1.0
O A:ASP417 4.7 20.5 1.0
O A:HOH890 4.9 29.0 1.0

Reference:

P.K.A.Jagtap, S.K.Verma, N.Vithani, V.S.Bais, B.Prakash. Crystal Structures Identify An Atypical Two-Metal-Ion Mechanism For Uridyltransfer in Glmu: Its Significance to Sugar Nucleotidyl Transferases J.Mol.Biol. V. 425 1745 2013.
ISSN: ISSN 0022-2836
PubMed: 23485416
DOI: 10.1016/J.JMB.2013.02.019
Page generated: Sun Dec 13 10:44:26 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy