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Cobalt in PDB 4jd4: Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065

Enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065

All present enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065:
1.3.98.1;

Protein crystallography data

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065, PDB code: 4jd4 was solved by D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Hashimoto, S.Matsuoka, T.Kuranaga, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.20 / 1.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.114, 71.964, 128.506, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 16.2

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065 (pdb code 4jd4). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065, PDB code: 4jd4:

Cobalt binding site 1 out of 1 in 4jd4

Go back to Cobalt Binding Sites List in 4jd4
Cobalt binding site 1 out of 1 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co413

b:12.3
occ:1.00
CO B:NCO413 0.0 12.3 1.0
N5 B:NCO413 2.1 13.8 1.0
N2 B:NCO413 2.1 12.5 1.0
N1 B:NCO413 2.1 12.2 1.0
N4 B:NCO413 2.1 11.7 1.0
N6 B:NCO413 2.1 12.8 1.0
N3 B:NCO413 2.1 14.3 1.0
O B:GLN275 3.8 10.0 1.0
O B:HOH733 4.0 30.9 1.0
O B:GLU276 4.2 11.8 1.0
O B:HOH554 4.4 18.9 1.0
O B:HOH760 4.4 33.5 1.0
O B:HOH650 4.5 27.1 1.0
O B:HOH769 4.5 35.9 1.0
O B:HOH744 4.5 28.4 1.0
C B:GLU276 4.8 8.7 1.0

Reference:

D.K.Inaoka, M.Iida, T.Tabuchi, N.Lee, S.Hashimoto, S.Matsuoka, T.Kuranaga, T.Shiba, K.Sakamoto, S.Suzuki, E.O.Balogun, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Mii-4-065 To Be Published.
Page generated: Sun Dec 13 10:44:50 2020

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