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Cobalt in PDB 4jh5: Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin

Protein crystallography data

The structure of Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin, PDB code: 4jh5 was solved by M.K.Thompson, J.Harp, M.E.Keithly, K.Jagessar, P.D.Cook, R.N.Armstrong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.82 / 1.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.327, 68.230, 69.880, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 20.9

Other elements in 4jh5:

The structure of Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin (pdb code 4jh5). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin, PDB code: 4jh5:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 4jh5

Go back to Cobalt Binding Sites List in 4jh5
Cobalt binding site 1 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co201

b:18.3
occ:1.00
O2P A:FCN202 1.9 16.3 1.0
OE1 A:GLU115 2.0 9.5 1.0
NE2 A:HIS66 2.1 8.5 1.0
NE2 B:HIS7 2.1 8.6 1.0
O A:FCN202 2.5 17.4 1.0
CE1 B:HIS7 3.0 9.2 1.0
CD2 A:HIS66 3.0 9.4 1.0
CD A:GLU115 3.0 11.6 1.0
CE1 A:HIS66 3.1 9.9 1.0
CD2 B:HIS7 3.1 8.5 1.0
P A:FCN202 3.2 15.3 1.0
C1 A:FCN202 3.4 16.6 1.0
OE2 A:GLU115 3.4 12.5 1.0
C2 A:FCN202 3.6 17.4 1.0
C3 A:FCN202 3.7 17.1 1.0
OH A:TYR105 3.9 13.4 1.0
CE1 A:TYR105 4.1 12.2 1.0
O A:HOH343 4.1 16.7 1.0
O1P A:FCN202 4.1 15.4 1.0
ND1 B:HIS7 4.2 9.2 1.0
ND1 A:HIS66 4.2 9.8 1.0
CG A:HIS66 4.2 8.8 1.0
CG B:HIS7 4.2 8.3 1.0
CG A:GLU115 4.4 10.6 1.0
O3P A:FCN202 4.4 15.0 1.0
CZ A:TYR105 4.4 13.7 1.0
CB A:ALA68 4.5 8.8 1.0
CB B:CYS9 4.6 12.2 1.0
CB A:GLU115 4.7 10.6 1.0

Cobalt binding site 2 out of 2 in 4jh5

Go back to Cobalt Binding Sites List in 4jh5
Cobalt binding site 2 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Fosb From Bacillus Cereus with Cobalt and Fosfomycin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co201

b:18.1
occ:1.00
O3P B:FCN203 2.0 13.5 1.0
OE1 B:GLU115 2.0 9.2 1.0
NE2 A:HIS7 2.0 9.2 1.0
CE1 B:HIS66 2.1 7.5 1.0
O B:FCN203 2.5 17.3 1.0
CE1 A:HIS7 2.9 8.9 1.0
NE2 B:HIS66 3.0 9.9 1.0
CD B:GLU115 3.1 9.7 1.0
CD2 A:HIS7 3.1 9.3 1.0
ND1 B:HIS66 3.2 12.1 1.0
P B:FCN203 3.2 13.2 1.0
C1 B:FCN203 3.4 17.0 1.0
OE2 B:GLU115 3.5 9.6 1.0
C2 B:FCN203 3.6 18.2 1.0
C3 B:FCN203 3.7 17.3 1.0
OH B:TYR105 4.0 12.4 1.0
O B:HOH334 4.0 12.9 1.0
O2P B:FCN203 4.1 13.2 1.0
CE1 B:TYR105 4.1 12.3 1.0
ND1 A:HIS7 4.1 9.0 1.0
CD2 B:HIS66 4.2 7.6 1.0
CG A:HIS7 4.2 8.4 1.0
CG B:HIS66 4.3 8.4 1.0
O1P B:FCN203 4.3 14.5 1.0
CG B:GLU115 4.4 8.9 1.0
CB B:ALA68 4.5 8.1 1.0
CZ B:TYR105 4.5 12.2 1.0
CB B:GLU115 4.6 10.0 1.0
CB A:CYS9 4.6 12.0 1.0

Reference:

M.K.Thompson, M.E.Keithly, J.Harp, P.D.Cook, K.L.Jagessar, G.A.Sulikowski, R.N.Armstrong. Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred By Fosb From Bacillus Cereus. Biochemistry V. 52 7350 2013.
ISSN: ISSN 0006-2960
PubMed: 24004181
DOI: 10.1021/BI4009648
Page generated: Sun Dec 13 10:44:51 2020

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