Atomistry » Cobalt » PDB 4j2m-4ngl » 4jky
Atomistry »
  Cobalt »
    PDB 4j2m-4ngl »
      4jky »

Cobalt in PDB 4jky: Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase

Enzymatic activity of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase

All present enzymatic activity of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase:
2.7.4.3;

Protein crystallography data

The structure of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase, PDB code: 4jky was solved by Y.-J.Cho, D.Kern, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.46 / 2.37
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.550, 73.530, 87.470, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 26.7

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase (pdb code 4jky). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase, PDB code: 4jky:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 4jky

Go back to Cobalt Binding Sites List in 4jky
Cobalt binding site 1 out of 2 in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co303

b:32.9
occ:0.23
O A:HOH401 1.8 33.9 0.8
O A:HOH409 2.0 26.1 1.0
O A:HOH482 2.4 38.3 1.0
O A:HOH437 2.4 28.7 1.0
O3B A:ADP301 3.3 25.3 1.0
O1B A:ADP302 3.6 41.0 1.0
O A:HOH436 3.7 34.2 1.0
O A:HOH413 3.8 32.7 1.0
O2A A:ADP302 3.9 31.3 1.0
CA A:GLY14 4.2 24.9 1.0
OD2 A:ASP81 4.3 20.7 1.0
NH2 A:ARG36 4.4 31.6 1.0
O2B A:ADP301 4.4 31.0 1.0
OG A:SER30 4.4 26.8 1.0
PB A:ADP301 4.4 27.1 1.0
O A:HOH422 4.5 28.2 1.0
N A:GLY14 4.5 23.6 1.0
OD1 A:ASP81 4.6 25.4 1.0
O A:HOH476 4.7 36.8 1.0
NH1 A:ARG124 4.7 36.7 1.0
O1A A:ADP302 4.7 37.0 1.0
PA A:ADP302 4.8 29.4 1.0
CG A:ASP81 4.8 23.4 1.0
O1A A:ADP301 4.8 32.4 1.0
OD1 A:ASP33 4.9 37.0 1.0

Cobalt binding site 2 out of 2 in 4jky

Go back to Cobalt Binding Sites List in 4jky
Cobalt binding site 2 out of 2 in the Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Cobalt Between Two Adp'S in the Active Site of Adenylate Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co303

b:39.4
occ:0.09
O B:HOH401 1.3 43.3 0.9
O B:HOH437 2.2 42.2 1.0
O B:HOH459 2.4 37.2 1.0
O B:HOH429 2.4 40.5 1.0
O B:HOH458 2.7 40.2 0.8
O3B B:ADP301 2.8 37.3 1.0
O2B B:ADP302 3.4 45.5 1.0
CA B:GLY14 3.9 37.6 1.0
OD2 B:ASP81 4.0 39.1 1.0
PB B:ADP301 4.0 36.6 1.0
N B:GLY14 4.1 34.9 1.0
O1B B:ADP301 4.2 31.8 1.0
O1A B:ADP301 4.3 33.9 1.0
O2A B:ADP302 4.4 36.4 1.0
O B:HOH442 4.4 34.7 1.0
OD1 B:ASP81 4.6 36.4 1.0
O1A B:ADP302 4.6 28.7 1.0
OG B:SER30 4.6 34.9 1.0
CG B:ASP81 4.7 34.9 1.0
NH2 B:ARG36 4.7 30.2 1.0
PB B:ADP302 4.8 56.4 1.0
NH1 B:ARG124 4.8 47.0 1.0
PA B:ADP302 4.9 34.7 1.0
PA B:ADP301 4.9 34.1 1.0
O3A B:ADP301 4.9 45.7 1.0

Reference:

Y.-J.Cho, D.Kern. A Metal in the Active Site of An Enzyme To Be Published.
Page generated: Sun Dec 13 10:44:54 2020

Last articles

Zn in 7O75
Zn in 7O73
Zn in 7O4I
Zn in 7O72
Zn in 7O4J
Zn in 7NVR
Zn in 7NVY
Zn in 7NVZ
Zn in 7NW0
Zn in 7O4K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy