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Cobalt in PDB 4jz2: Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile

Enzymatic activity of Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile

All present enzymatic activity of Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile, PDB code: 4jz2 was solved by W.Li, T.L.Ying, C.L.Wang, Y.Zhao, H.F.Wang, X.S.Tan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.71 / 1.95
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.321, 80.321, 250.991, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 19

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile (pdb code 4jz2). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile, PDB code: 4jz2:

Cobalt binding site 1 out of 1 in 4jz2

Go back to Cobalt Binding Sites List in 4jz2
Cobalt binding site 1 out of 1 in the Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:27.8
occ:1.00
OD2 A:ASP193 2.0 27.5 1.0
NE2 A:HIS111 2.1 29.8 1.0
NE2 A:HIS197 2.2 28.2 1.0
NE2 A:HIS56 2.2 28.0 1.0
O A:HOH401 2.4 26.0 1.0
CD2 A:HIS111 3.1 31.4 1.0
CD2 A:HIS56 3.1 27.1 1.0
CE1 A:HIS111 3.1 30.9 1.0
CG A:ASP193 3.1 26.9 1.0
CD2 A:HIS197 3.1 25.7 1.0
CE1 A:HIS197 3.1 28.6 1.0
CE1 A:HIS56 3.2 28.3 1.0
OD1 A:ASP193 3.6 26.1 1.0
ND1 A:HIS111 4.2 30.8 1.0
CG A:HIS111 4.2 29.8 1.0
ND1 A:HIS197 4.3 28.0 1.0
CG A:HIS56 4.3 32.5 1.0
ND1 A:HIS56 4.3 29.3 1.0
CG A:HIS197 4.3 29.2 1.0
CB A:ASP193 4.3 26.8 1.0
CZ2 A:TRP159 4.6 27.4 1.0
CB A:TRP195 4.6 24.7 1.0
NE2 A:GLN178 4.7 27.6 1.0
CG A:TRP195 4.8 27.9 1.0
CH2 A:TRP159 4.9 30.2 1.0
CB A:ALA198 4.9 26.0 1.0

Reference:

W.Li, T.L.Ying, C.L.Wang, Y.Zhao, H.F.Wang, X.S.Tan. Crystal Structure of Co Ion Substituted SOD2 From Clostridium Difficile To Be Published.
Page generated: Sun Dec 13 10:44:56 2020

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