Cobalt in PDB 4ker: Crystal Structure of Ssopox W263V

All present enzymatic activity of Crystal Structure of Ssopox W263V:
3.1.8.1;

The structure of Crystal Structure of Ssopox W263V, PDB code: 4ker was solved by G.Gotthard, J.Hiblot, E.Chabriere, M.Elias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.41 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	87.200, 103.500, 151.600, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 23.7

The structure of Crystal Structure of Ssopox W263V also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Cobalt atom in the Crystal Structure of Ssopox W263V (pdb code 4ker). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Crystal Structure of Ssopox W263V, PDB code: 4ker:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the Crystal Structure of Ssopox W263V


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Ssopox W263V within 5.0Å range: probe atom residue distance (Å) B Occ A:Co402 b:27.4 occ:1.00 OQ2 A:KCX137 1.8 22.7 1.0 NE2 A:HIS199 1.9 29.4 1.0 ND1 A:HIS170 1.9 26.4 1.0 O A:HOH599 2.0 22.8 1.0 CE1 A:HIS199 2.8 30.1 1.0 CX A:KCX137 2.8 21.1 1.0 CE1 A:HIS170 2.9 24.5 1.0 CG A:HIS170 3.0 24.6 1.0 CD2 A:HIS199 3.0 29.1 1.0 OQ1 A:KCX137 3.2 21.2 1.0 FE A:FE2401 3.3 22.6 1.0 CB A:HIS170 3.4 24.1 1.0 NH2 A:ARG223 3.5 32.7 1.0 CE1 A:HIS22 3.9 24.7 1.0 ND1 A:HIS199 4.0 29.0 1.0 NZ A:KCX137 4.0 22.3 1.0 NE2 A:HIS170 4.1 23.6 1.0 CD2 A:HIS170 4.1 23.4 1.0 CG A:HIS199 4.1 28.4 1.0 NE2 A:HIS22 4.1 23.6 1.0 CA A:HIS170 4.2 24.2 1.0 OD2 A:ASP256 4.2 24.1 1.0 O1 A:PEG406 4.2 45.1 1.0 CE2 A:TYR97 4.2 29.5 1.0 OH A:TYR97 4.2 35.5 1.0 CZ A:ARG223 4.4 30.4 1.0 OD1 A:ASP256 4.5 23.2 1.0 CE A:KCX137 4.5 21.8 1.0 CG A:ASP256 4.7 24.0 1.0 NE A:ARG223 4.7 28.6 1.0 CZ A:TYR97 4.8 30.3 1.0

Cobalt binding site 2 out of 4 in the Crystal Structure of Ssopox W263V


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Ssopox W263V within 5.0Å range: probe atom residue distance (Å) B Occ B:Co402 b:27.8 occ:1.00 OQ1 B:KCX137 1.8 23.8 1.0 O B:HOH539 1.9 20.6 1.0 NE2 B:HIS199 1.9 28.6 1.0 ND1 B:HIS170 1.9 25.5 1.0 CE1 B:HIS170 2.7 22.9 1.0 CX B:KCX137 2.8 21.9 1.0 CE1 B:HIS199 2.8 27.3 1.0 CD2 B:HIS199 3.0 28.6 1.0 OQ2 B:KCX137 3.1 21.8 1.0 CG B:HIS170 3.1 23.7 1.0 O2 B:GOL406 3.3 47.1 1.0 FE B:FE2401 3.3 23.6 1.0 CB B:HIS170 3.7 23.1 1.0 NH2 B:ARG223 3.7 25.6 1.0 C2 B:GOL406 3.9 52.1 1.0 NE2 B:HIS170 3.9 21.9 1.0 CE1 B:HIS22 3.9 24.4 1.0 NE2 B:HIS22 4.0 26.4 1.0 OD2 B:ASP256 4.0 27.9 1.0 ND1 B:HIS199 4.0 27.4 1.0 NZ B:KCX137 4.0 22.3 1.0 CE2 B:TYR97 4.1 33.8 1.0 CG B:HIS199 4.1 27.1 1.0 OH B:TYR97 4.1 39.9 1.0 CD2 B:HIS170 4.1 22.4 1.0 CA B:HIS170 4.3 24.4 1.0 C3 B:GOL406 4.4 53.5 1.0 OD1 B:ASP256 4.5 26.3 1.0 CZ B:ARG223 4.5 24.4 1.0 CG B:ASP256 4.6 28.6 1.0 CE B:KCX137 4.6 21.7 1.0 CZ B:TYR97 4.6 36.2 1.0 NE B:ARG223 4.7 24.9 1.0

Cobalt binding site 3 out of 4 in the Crystal Structure of Ssopox W263V


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of Ssopox W263V within 5.0Å range: probe atom residue distance (Å) B Occ C:Co402 b:33.9 occ:1.00 OQ1 C:KCX137 1.8 23.7 1.0 NE2 C:HIS199 1.9 37.2 1.0 ND1 C:HIS170 2.0 33.1 1.0 O C:HOH583 2.2 18.0 1.0 CE1 C:HIS199 2.7 38.0 1.0 CE1 C:HIS170 2.9 30.5 1.0 CX C:KCX137 2.9 22.5 1.0 CD2 C:HIS199 3.0 36.6 1.0 CG C:HIS170 3.1 29.6 1.0 FE C:FE2401 3.3 21.7 1.0 OQ2 C:KCX137 3.4 22.0 1.0 CB C:HIS170 3.5 26.8 1.0 NH2 C:ARG223 3.6 34.9 1.0 O2 C:GOL404 3.7 57.9 1.0 OD2 C:ASP256 3.8 26.4 1.0 ND1 C:HIS199 3.9 38.4 1.0 NE2 C:HIS22 4.0 22.7 1.0 CE1 C:HIS22 4.0 21.1 1.0 NE2 C:HIS170 4.1 27.3 1.0 CG C:HIS199 4.1 35.4 1.0 NZ C:KCX137 4.1 23.0 1.0 OH C:TYR97 4.2 32.8 1.0 CE2 C:TYR97 4.2 32.1 1.0 CD2 C:HIS170 4.2 27.4 1.0 CZ C:ARG223 4.4 34.5 1.0 OD1 C:ASP256 4.4 27.7 1.0 CG C:ASP256 4.5 27.4 1.0 CA C:HIS170 4.5 29.0 1.0 CE C:KCX137 4.6 24.6 1.0 CZ C:TYR97 4.7 33.3 1.0 NE C:ARG223 4.7 31.9 1.0 C2 C:GOL404 4.9 62.4 1.0

Cobalt binding site 4 out of 4 in the Crystal Structure of Ssopox W263V


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of Ssopox W263V within 5.0Å range: probe atom residue distance (Å) B Occ D:Co402 b:28.6 occ:1.00 OQ2 D:KCX137 1.8 26.0 1.0 ND1 D:HIS170 1.9 26.1 1.0 NE2 D:HIS199 1.9 27.8 1.0 O D:HOH588 2.1 44.3 1.0 O D:HOH586 2.3 30.2 1.0 CX D:KCX137 2.7 27.6 1.0 CE1 D:HIS199 2.8 28.3 1.0 CE1 D:HIS170 2.8 26.1 1.0 CG D:HIS170 3.0 24.6 1.0 OQ1 D:KCX137 3.1 24.9 1.0 CD2 D:HIS199 3.1 25.5 1.0 FE D:FE2401 3.2 23.8 1.0 CB D:HIS170 3.5 24.2 1.0 NH2 D:ARG223 3.8 26.7 1.0 CE1 D:HIS22 3.9 24.5 1.0 ND1 D:HIS199 4.0 26.5 1.0 NZ D:KCX137 4.0 27.8 1.0 NE2 D:HIS170 4.0 26.5 1.0 NE2 D:HIS22 4.1 25.1 1.0 CG D:HIS199 4.1 26.1 1.0 CD2 D:HIS170 4.1 26.4 1.0 OD2 D:ASP256 4.1 25.3 1.0 CE2 D:TYR97 4.3 33.5 1.0 OD1 D:ASP256 4.4 26.6 1.0 OH D:TYR97 4.4 39.9 1.0 O D:HOH587 4.4 27.9 1.0 CA D:HIS170 4.4 25.4 1.0 CZ D:ARG223 4.5 27.1 1.0 CE D:KCX137 4.5 27.8 1.0 CG D:ASP256 4.6 25.4 1.0 NE D:ARG223 4.7 26.8 1.0 CZ D:TYR97 4.9 34.4 1.0 NE2 D:HIS24 5.0 22.6 1.0

J.Hiblot, G.Gotthard, M.Elias, E.Chabriere. Differential Active Site Loop Conformations Mediate Promiscuous Activities in the Lactonase Ssopox. Plos One V. 8 75272 2013.
ISSN: ESSN 1932-6203
PubMed: 24086491
DOI: 10.1371/JOURNAL.PONE.0075272