Atomistry » Cobalt » PDB 4j2m-4ngl » 4mag
Atomistry »
  Cobalt »
    PDB 4j2m-4ngl »
      4mag »

Cobalt in PDB 4mag: Crystal Structure of the Periplasmic Sialic Acid Binding Protein From Vibrio Cholerea

Protein crystallography data

The structure of Crystal Structure of the Periplasmic Sialic Acid Binding Protein From Vibrio Cholerea, PDB code: 4mag was solved by S.Ramaswamy, C.Cho, M.A.Apicella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 11.73 / 1.45
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 74.977, 82.315, 119.354, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.9

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the Periplasmic Sialic Acid Binding Protein From Vibrio Cholerea (pdb code 4mag). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of the Periplasmic Sialic Acid Binding Protein From Vibrio Cholerea, PDB code: 4mag:

Cobalt binding site 1 out of 1 in 4mag

Go back to Cobalt Binding Sites List in 4mag
Cobalt binding site 1 out of 1 in the Crystal Structure of the Periplasmic Sialic Acid Binding Protein From Vibrio Cholerea


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Periplasmic Sialic Acid Binding Protein From Vibrio Cholerea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co401

b:30.4
occ:1.00
NE2 A:HIS307 1.9 29.4 1.0
ND1 A:HIS305 2.0 28.4 1.0
ND1 A:HIS302 2.2 33.5 1.0
CE1 A:HIS307 2.9 31.2 1.0
CE1 A:HIS305 2.9 28.4 1.0
CD2 A:HIS307 3.0 29.1 1.0
CG A:HIS305 3.0 27.4 1.0
CE1 A:HIS302 3.1 33.9 1.0
CG A:HIS302 3.2 31.8 1.0
CB A:HIS305 3.4 26.9 1.0
CB A:HIS302 3.5 29.6 1.0
CA A:HIS302 3.9 29.0 1.0
ND1 A:HIS307 4.0 32.2 1.0
NE2 A:HIS305 4.0 28.6 1.0
CD2 A:HIS305 4.1 28.0 1.0
CG A:HIS307 4.1 32.0 1.0
NE2 A:HIS302 4.1 35.6 1.0
CD2 A:HIS302 4.2 34.6 1.0
O A:HIS302 4.7 27.0 1.0
C A:HIS302 4.8 27.4 1.0
CA A:HIS305 4.9 27.4 1.0
O A:GLN301 4.9 32.3 1.0

Reference:

T.Gangi Setty, C.Cho, S.Govindappa, M.A.Apicella, S.Ramaswamy. Bacterial Periplasmic Sialic Acid-Binding Proteins Exhibit A Conserved Binding Site. Acta Crystallogr.,Sect.D V. 70 1801 2014.
ISSN: ISSN 0907-4449
PubMed: 25004958
DOI: 10.1107/S139900471400830X
Page generated: Sun Dec 13 10:45:13 2020

Last articles

Zn in 7O75
Zn in 7O73
Zn in 7O4I
Zn in 7O72
Zn in 7O4J
Zn in 7NVR
Zn in 7NVY
Zn in 7NVZ
Zn in 7NW0
Zn in 7O4K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy