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Cobalt in PDB 4n73: Crystal Structure of the Ligand Binding Domain (Lbd) of Rev-Erb Beta Bound to Cobalt Protoporphyrin IX

Protein crystallography data

The structure of Crystal Structure of the Ligand Binding Domain (Lbd) of Rev-Erb Beta Bound to Cobalt Protoporphyrin IX, PDB code: 4n73 was solved by E.Matta-Camacho, D.Kojetin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.61 / 1.87
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.660, 48.680, 69.750, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 25.4

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the Ligand Binding Domain (Lbd) of Rev-Erb Beta Bound to Cobalt Protoporphyrin IX (pdb code 4n73). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of the Ligand Binding Domain (Lbd) of Rev-Erb Beta Bound to Cobalt Protoporphyrin IX, PDB code: 4n73:

Cobalt binding site 1 out of 1 in 4n73

Go back to Cobalt Binding Sites List in 4n73
Cobalt binding site 1 out of 1 in the Crystal Structure of the Ligand Binding Domain (Lbd) of Rev-Erb Beta Bound to Cobalt Protoporphyrin IX


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Ligand Binding Domain (Lbd) of Rev-Erb Beta Bound to Cobalt Protoporphyrin IX within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co601

b:18.7
occ:1.00
CO A:COH601 0.0 18.7 1.0
HG A:CYS384 1.7 20.7 1.0
NC A:COH601 1.8 13.9 1.0
NB A:COH601 1.9 18.5 1.0
NA A:COH601 2.0 16.8 1.0
ND A:COH601 2.1 13.8 1.0
SG A:CYS384 2.4 17.2 1.0
NE2 A:HIS568 2.4 17.6 1.0
C1C A:COH601 2.8 16.8 1.0
C4C A:COH601 2.9 13.5 1.0
C4B A:COH601 2.9 18.0 1.0
C1B A:COH601 3.0 16.7 1.0
C4A A:COH601 3.0 20.4 1.0
C1D A:COH601 3.1 11.4 1.0
C1A A:COH601 3.1 20.9 1.0
C4D A:COH601 3.1 15.1 1.0
HB2 A:CYS384 3.2 21.4 1.0
CD2 A:HIS568 3.3 18.1 1.0
CHC A:COH601 3.3 17.0 1.0
HD2 A:HIS568 3.3 21.7 1.0
CHD A:COH601 3.4 16.1 1.0
CHB A:COH601 3.4 14.0 1.0
CE1 A:HIS568 3.4 18.4 1.0
CB A:CYS384 3.5 17.8 1.0
CHA A:COH601 3.5 15.8 1.0
HE1 A:HIS568 3.6 22.1 1.0
C2C A:COH601 4.1 17.6 1.0
HA A:CYS384 4.1 17.3 1.0
C3C A:COH601 4.1 16.1 1.0
HB3 A:CYS384 4.2 21.4 1.0
C3B A:COH601 4.2 17.3 1.0
C2B A:COH601 4.2 20.1 1.0
HD2 A:PRO385 4.3 16.6 1.0
C3A A:COH601 4.3 20.9 1.0
C2A A:COH601 4.3 21.4 1.0
HG2 A:MET386 4.3 22.0 1.0
C2D A:COH601 4.3 11.6 1.0
HE1 A:PHE443 4.3 20.5 1.0
C3D A:COH601 4.3 18.5 1.0
CA A:CYS384 4.4 14.4 1.0
HZ A:PHE405 4.4 25.2 1.0
CG A:HIS568 4.5 18.6 1.0
ND1 A:HIS568 4.5 16.1 1.0
HG3 A:MET386 4.5 22.0 1.0
HB2 A:MET386 4.7 20.9 1.0
H A:MET386 4.8 14.5 1.0
CG A:MET386 4.9 18.4 1.0
HE1 A:MET486 4.9 19.1 1.0

Reference:

E.Matta-Camacho, S.Banerjee, T.S.Hughes, L.A.Solt, Y.Wang, T.P.Burris, D.J.Kojetin. Structure of Rev-Erb Beta Ligand-Binding Domain Bound to A Porphyrin Antagonist. J.Biol.Chem. V. 289 20054 2014.
ISSN: ISSN 0021-9258
PubMed: 24872411
DOI: 10.1074/JBC.M113.545111
Page generated: Sun Dec 13 10:45:15 2020

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