Atomistry » Cobalt » PDB 4j2m-4ngl » 4ngk
Atomistry »
  Cobalt »
    PDB 4j2m-4ngl »
      4ngk »

Cobalt in PDB 4ngk: Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2

Enzymatic activity of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2

All present enzymatic activity of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2:
3.2.1.17;

Protein crystallography data

The structure of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2, PDB code: 4ngk was solved by P.Benas, L.Legrand, M.Ries-Kautt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.33 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.286, 79.286, 37.729, 90.00, 90.00, 90.00
R / Rfree (%) 12.2 / 15.9

Other elements in 4ngk:

The structure of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2 (pdb code 4ngk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2, PDB code: 4ngk:

Cobalt binding site 1 out of 1 in 4ngk

Go back to Cobalt Binding Sites List in 4ngk
Cobalt binding site 1 out of 1 in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co201

b:24.6
occ:0.54
 OD2 A:ASP52 1.8 27.9 1.0
O A:HOH304 2.2 30.2 0.7
O A:HOH302 2.2 35.0 0.9
O A:HOH303 2.2 27.7 0.8
O A:HOH305 2.2 28.9 0.6
O A:HOH301 2.3 30.3 1.0
CG A:ASP52 3.0 18.1 1.0
O A:HOH308 3.5 32.7 1.0
OD1 A:ASP52 3.5 19.5 1.0
O A:HOH307 3.6 38.8 1.0
CB A:ASP52 4.2 14.7 1.0
O A:GLN57 4.2 15.7 1.0
OE1 A:GLU35 4.3 18.8 1.0
OD1 A:ASN46 4.5 32.4 1.0
CB A:GLN57 4.6 14.2 1.0
ND2 A:ASN46 5.0 25.8 1.0

Reference:

P.Benas, N.Auzeil, L.Legrand, F.Brachet, A.Regazzetti, M.Ries-Kautt. Weak Protein-Cationic Co-Ion Interactions Addressed By X-Ray Crystallography and Mass Spectrometry. Acta Crystallogr.,Sect.D V. 70 2217 2014.
ISSN: ISSN 0907-4449
PubMed: 25084340
DOI: 10.1107/S1399004714011304
Page generated: Tue Jul 30 17:20:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy