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Cobalt in PDB 4ngk: Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2

Enzymatic activity of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2

All present enzymatic activity of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2:
3.2.1.17;

Protein crystallography data

The structure of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2, PDB code: 4ngk was solved by P.Benas, L.Legrand, M.Ries-Kautt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.33 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.286, 79.286, 37.729, 90.00, 90.00, 90.00
R / Rfree (%) 12.2 / 15.9

Other elements in 4ngk:

The structure of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2 (pdb code 4ngk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2, PDB code: 4ngk:

Cobalt binding site 1 out of 1 in 4ngk

Go back to Cobalt Binding Sites List in 4ngk
Cobalt binding site 1 out of 1 in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.2 M COCL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co201

b:24.6
occ:0.54
 OD2 A:ASP52 1.8 27.9 1.0
O A:HOH304 2.2 30.2 0.7
O A:HOH302 2.2 35.0 0.9
O A:HOH303 2.2 27.7 0.8
O A:HOH305 2.2 28.9 0.6
O A:HOH301 2.3 30.3 1.0
CG A:ASP52 3.0 18.1 1.0
O A:HOH308 3.5 32.7 1.0
OD1 A:ASP52 3.5 19.5 1.0
O A:HOH307 3.6 38.8 1.0
CB A:ASP52 4.2 14.7 1.0
O A:GLN57 4.2 15.7 1.0
OE1 A:GLU35 4.3 18.8 1.0
OD1 A:ASN46 4.5 32.4 1.0
CB A:GLN57 4.6 14.2 1.0
ND2 A:ASN46 5.0 25.8 1.0

Reference:

P.Benas, N.Auzeil, L.Legrand, F.Brachet, A.Regazzetti, M.Ries-Kautt. Weak Protein-Cationic Co-Ion Interactions Addressed By X-Ray Crystallography and Mass Spectrometry. Acta Crystallogr.,Sect.D V. 70 2217 2014.
ISSN: ISSN 0907-4449
PubMed: 25084340
DOI: 10.1107/S1399004714011304
Page generated: Tue Jul 30 17:20:00 2024

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