Cobalt in PDB 4ngl: Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2

Enzymatic activity of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2

All present enzymatic activity of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2:
3.2.1.17;

Protein crystallography data

The structure of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2, PDB code: 4ngl was solved by P.Benas, L.Legrand, M.Ries-Kautt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	28.03 / 1.52
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	79.282, 79.282, 37.529, 90.00, 90.00, 90.00
*R / R_free (%)*	15 / 16.3

Other elements in 4ngl:

The structure of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2 (pdb code 4ngl). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2, PDB code: 4ngl:

Cobalt binding site 1 out of 1 in 4ngl

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Cobalt Binding Sites List in 4ngl

Cobalt binding site 1 out of 1 in the Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2

Mono view

Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Previously De-Ionized Hew Lysozyme Batch Crystallized in 0.6 M COCL2 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Co201 b:22.3 occ:0.83	OD2	A:ASP52	2.0	20.8	1.0
	O	A:HOH304	2.1	24.5	1.0
	O	A:HOH305	2.1	21.8	0.9
	O	A:HOH303	2.1	22.5	1.0
	O	A:HOH302	2.2	27.8	0.9
	O	A:HOH301	2.2	23.9	1.0
	CG	A:ASP52	3.1	17.8	1.0
	OD1	A:ASP52	3.6	18.3	1.0
	O	A:HOH307	3.6	37.0	1.0
	O	A:HOH308	3.9	24.2	1.0
	O	A:HOH309	4.0	24.6	0.9
	O	A:GLN57	4.2	15.4	1.0
	CB	A:ASP52	4.3	13.8	1.0
	OE1	A:GLU35	4.3	18.1	1.0
	OD1	A:ASN46	4.4	28.6	1.0
	CB	A:GLN57	4.6	12.3	1.0
	CD	A:GLU35	4.9	17.4	1.0
	OE2	A:GLU35	4.9	24.8	1.0

Reference:

P.Benas, N.Auzeil, L.Legrand, F.Brachet, A.Regazzetti, M.Ries-Kautt. Weak Protein-Cationic Co-Ion Interactions Addressed By X-Ray Crystallography and Mass Spectrometry. Acta Crystallogr.,Sect.D V. 70 2217 2014.
ISSN: ISSN 0907-4449
PubMed: 25084340
DOI: 10.1107/S1399004714011304

Page generated: Sun Dec 13 10:45:17 2020

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