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Cobalt in PDB 4nui: Crystal Structure of Cobalt-Bound Na-Asp-2

Protein crystallography data

The structure of Crystal Structure of Cobalt-Bound Na-Asp-2, PDB code: 4nui was solved by A.Hofmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.35 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.309, 52.213, 43.541, 90.00, 93.25, 90.00
R / Rfree (%) 15.6 / 19.1

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Cobalt-Bound Na-Asp-2 (pdb code 4nui). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Cobalt-Bound Na-Asp-2, PDB code: 4nui:

Cobalt binding site 1 out of 1 in 4nui

Go back to Cobalt Binding Sites List in 4nui
Cobalt binding site 1 out of 1 in the Crystal Structure of Cobalt-Bound Na-Asp-2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Cobalt-Bound Na-Asp-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co300

b:25.9
occ:1.00
O A:HOH460 2.3 24.9 1.0
NE2 A:HIS88 2.3 20.2 1.0
O A:HOH594 2.3 28.5 1.0
O A:HOH491 2.5 24.2 1.0
NE2 A:HIS148 2.6 14.6 1.0
O A:HOH572 2.8 22.4 1.0
CE1 A:HIS148 3.1 19.7 1.0
CD2 A:HIS88 3.3 20.8 1.0
CE1 A:HIS88 3.3 17.2 1.0
CD2 A:HIS148 3.5 15.5 1.0
ND1 A:HIS148 4.1 16.6 1.0
CG A:HIS148 4.3 10.8 1.0
CG A:HIS88 4.4 13.2 1.0
ND1 A:HIS88 4.4 14.2 1.0
O A:HOH578 4.5 22.7 1.0
O A:HOH502 4.7 19.8 1.0
O A:HOH553 4.9 29.6 1.0

Reference:

L.Mason, L.Tribolet, A.Simon, N.Von Gnielinski, L.Nienaber, P.Taylor, C.Willis, M.K.Jones, P.W.Sternberg, R.B.Gasser, A.Loukas, A.Hofmann. Probing the Equatorial Groove of the Hookworm Protein and Vaccine Candidate Antigen, Na-Asp-2. Int.J.Biochem.Cell Biol. V. 50 146 2014.
ISSN: ISSN 1357-2725
PubMed: 24631931
DOI: 10.1016/J.BIOCEL.2014.03.003
Page generated: Tue Jul 30 17:23:21 2024

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