Cobalt in PDB 4oqp: Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate

The structure of Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate, PDB code: 4oqp was solved by P.Rezacova, J.Skerlova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.77 / 1.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	76.995, 78.983, 91.338, 90.00, 90.00, 90.00
R / Rfree (%)	15.4 / 19.1

The structure of Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate also contains other interesting chemical elements:

Cadmium	(Cd)	1 atom
Nickel	(Ni)	3 atoms
Magnesium	(Mg)	1 atom

The binding sites of Cobalt atom in the Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate (pdb code 4oqp). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate, PDB code: 4oqp:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Co406 b:13.8 occ:0.50 CO A:CO406 0.0 13.8 0.5 CO A:CO406 1.2 24.3 0.5 OE2 A:GLU226 2.3 31.4 1.0 OE1 A:GLU226 2.6 32.1 1.0 CD A:GLU226 2.8 30.1 1.0 O A:HOH585 4.3 35.7 1.0 CG A:GLU226 4.3 27.4 1.0

Cobalt binding site 2 out of 2 in the Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis in Complex with Deoxyribose-5- Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Co406 b:24.3 occ:0.50 CO A:CO406 0.0 24.3 0.5 CO A:CO406 1.2 13.8 0.5 OE1 A:GLU226 2.4 32.1 1.0 OE2 A:GLU226 2.4 31.4 1.0 CD A:GLU226 2.7 30.1 1.0 O A:HOH585 4.1 35.7 1.0 CG A:GLU226 4.2 27.4 1.0

J.Skerlova, M.Fabry, M.Hubalek, Z.Otwinowski, P.Rezacova. Structure of the Effector-Binding Domain of Deoxyribonucleoside Regulator Deor From Bacillus Subtilis. Febs J. V. 281 4280 2014.
ISSN: ISSN 1742-464X
PubMed: 24863636
DOI: 10.1111/FEBS.12856