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Cobalt in PDB 4tzb: Structure of Ndm-Metallo-Beta-Lactamase

Protein crystallography data

The structure of Structure of Ndm-Metallo-Beta-Lactamase, PDB code: 4tzb was solved by J.A.Ferguson, A.Makena, J.Brem, M.A.Mcdonough, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.05 / 2.03
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 120.244, 120.244, 89.192, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.6

Other elements in 4tzb:

The structure of Structure of Ndm-Metallo-Beta-Lactamase also contains other interesting chemical elements:

Nickel (Ni) 4 atoms
Zinc (Zn) 1 atom
Cadmium (Cd) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structure of Ndm-Metallo-Beta-Lactamase (pdb code 4tzb). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Ndm-Metallo-Beta-Lactamase, PDB code: 4tzb:

Cobalt binding site 1 out of 1 in 4tzb

Go back to Cobalt Binding Sites List in 4tzb
Cobalt binding site 1 out of 1 in the Structure of Ndm-Metallo-Beta-Lactamase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Ndm-Metallo-Beta-Lactamase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co302

b:34.4
occ:1.00
OD2 A:ASP130 2.0 37.0 1.0
OD2 A:ASP95 2.1 34.2 1.0
O A:HOH475 2.1 37.1 1.0
O A:HOH461 2.1 38.4 1.0
O A:HOH520 2.1 37.3 1.0
O A:HOH476 2.1 32.8 1.0
CG A:ASP95 3.0 32.6 1.0
CG A:ASP130 3.1 36.8 1.0
OD1 A:ASP95 3.2 32.7 1.0
CB A:ASP130 3.6 33.7 1.0
O A:GLY127 4.0 28.9 1.0
OD1 A:ASP130 4.1 38.3 1.0
O A:HOH507 4.3 36.5 1.0
O A:HOH477 4.3 38.0 1.0
CB A:ASP95 4.4 31.5 1.0
O A:HOH437 4.4 29.7 1.0
N A:ASP130 4.5 30.0 1.0
CG2 A:VAL155 4.6 25.8 1.0
CA A:ASP130 4.7 31.5 1.0
O A:HOH527 4.8 48.1 1.0

Reference:

J.A.Ferguson, A.Makena, J.Brem, M.A.Mcdonough, C.J.Schofield. Structure of Metallo-Beta-Lactamase To Be Published.
Page generated: Sun Dec 13 10:45:53 2020

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