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Cobalt in PDB 4u6l: Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2

Protein crystallography data

The structure of Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2, PDB code: 4u6l was solved by J.Kondo, Y.Nomura, Y.Kitahara, S.Obika, H.Torigoe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.02 / 1.90
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 48.520, 48.520, 46.520, 90.00, 90.00, 120.00
R / Rfree (%) 25.1 / 27.5

Other elements in 4u6l:

The structure of Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 also contains other interesting chemical elements:

Strontium (Sr) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 (pdb code 4u6l). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2, PDB code: 4u6l:

Cobalt binding site 1 out of 1 in 4u6l

Go back to Cobalt Binding Sites List in 4u6l
Cobalt binding site 1 out of 1 in the Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co101

b:79.6
occ:1.00
CO A:NCO101 0.0 79.6 1.0
N2 A:NCO101 1.9 79.6 1.0
N5 A:NCO101 2.0 79.5 1.0
N6 A:NCO101 2.0 79.7 1.0
N4 A:NCO101 2.0 79.8 1.0
N3 A:NCO101 2.0 79.6 1.0
N1 A:NCO101 2.0 79.8 1.0
O A:HOH216 3.7 42.6 1.0
O A:HOH208 3.8 53.1 1.0
O6 A:G1 4.0 38.1 1.0
N7 A:G1 4.2 38.9 1.0
C6 A:G1 4.8 39.0 1.0
C5 A:G1 4.9 38.7 1.0
O A:HOH222 5.0 44.4 1.0

Reference:

J.Kondo, Y.Nomura, Y.Kitahara, S.Obika, H.Torigoe. Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 To Be Published.
Page generated: Sun Dec 13 10:45:58 2020

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