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Cobalt in PDB 4zci: Crystal Structure of Escherichia Coli Gtpase Bipa/Typa

Protein crystallography data

The structure of Crystal Structure of Escherichia Coli Gtpase Bipa/Typa, PDB code: 4zci was solved by H.T.Fan, J.Hahm, S.Diggs, G.Blaha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.00 / 2.63
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.717, 161.391, 89.601, 90.00, 97.95, 90.00
R / Rfree (%) 21 / 24.8

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Escherichia Coli Gtpase Bipa/Typa (pdb code 4zci). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Crystal Structure of Escherichia Coli Gtpase Bipa/Typa, PDB code: 4zci:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in 4zci

Go back to Cobalt Binding Sites List in 4zci
Cobalt binding site 1 out of 4 in the Crystal Structure of Escherichia Coli Gtpase Bipa/Typa


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Escherichia Coli Gtpase Bipa/Typa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1001

b:55.9
occ:1.00
CO A:NCO1001 0.0 55.9 1.0
N5 A:NCO1001 2.0 52.7 1.0
N4 A:NCO1001 2.0 56.6 1.0
N6 A:NCO1001 2.0 56.4 1.0
N3 A:NCO1001 2.0 53.7 1.0
N1 A:NCO1001 2.0 59.5 1.0
N2 A:NCO1001 2.0 51.7 1.0
O A:ARG483 3.8 58.8 1.0
O A:SER530 4.2 64.3 1.0
OD2 A:ASP573 4.5 71.7 1.0
C A:ARG483 5.0 56.6 1.0

Cobalt binding site 2 out of 4 in 4zci

Go back to Cobalt Binding Sites List in 4zci
Cobalt binding site 2 out of 4 in the Crystal Structure of Escherichia Coli Gtpase Bipa/Typa


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Escherichia Coli Gtpase Bipa/Typa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1002

b:0.9
occ:1.00
CO A:NCO1002 0.0 0.9 1.0
N4 A:NCO1002 2.0 0.8 1.0
N3 A:NCO1002 2.0 0.5 1.0
N1 A:NCO1002 2.0 0.2 1.0
N5 A:NCO1002 2.0 0.1 1.0
N2 A:NCO1002 2.0 0.8 1.0
N6 A:NCO1002 2.0 0.8 1.0
OD1 A:ASP159 4.1 0.1 1.0
CA A:ASP159 4.7 0.2 1.0
N A:ASP159 4.7 0.2 1.0
CG A:ASP159 5.0 0.5 1.0

Cobalt binding site 3 out of 4 in 4zci

Go back to Cobalt Binding Sites List in 4zci
Cobalt binding site 3 out of 4 in the Crystal Structure of Escherichia Coli Gtpase Bipa/Typa


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of Escherichia Coli Gtpase Bipa/Typa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1001

b:67.0
occ:1.00
CO B:NCO1001 0.0 67.0 1.0
N6 B:NCO1001 2.0 68.6 1.0
N3 B:NCO1001 2.0 69.1 1.0
N5 B:NCO1001 2.0 61.9 1.0
N2 B:NCO1001 2.0 65.4 1.0
N1 B:NCO1001 2.0 66.3 1.0
N4 B:NCO1001 2.0 70.9 1.0
O B:ARG483 3.9 72.3 1.0
O B:SER530 4.2 66.9 1.0
O B:HOH1112 4.4 53.7 1.0
OD2 B:ASP573 4.5 82.7 1.0

Cobalt binding site 4 out of 4 in 4zci

Go back to Cobalt Binding Sites List in 4zci
Cobalt binding site 4 out of 4 in the Crystal Structure of Escherichia Coli Gtpase Bipa/Typa


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of Escherichia Coli Gtpase Bipa/Typa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co1002

b:0.8
occ:1.00
CO B:NCO1002 0.0 0.8 1.0
N4 B:NCO1002 2.0 0.8 1.0
N2 B:NCO1002 2.0 0.1 1.0
N3 B:NCO1002 2.0 0.5 1.0
N1 B:NCO1002 2.0 0.5 1.0
N6 B:NCO1002 2.0 1.0 1.0
N5 B:NCO1002 2.0 0.7 1.0
OD1 B:ASP159 4.3 0.5 1.0
N B:ASP159 4.8 0.6 1.0
CA B:ASP159 5.0 0.7 1.0

Reference:

H.Fan, J.Hahm, S.Diggs, J.J.Perry, G.Blaha. Structural and Functional Analysis of Bipa, A Regulator of Virulence in Enteropathogenic Escherichia Coli. J.Biol.Chem. V. 290 20856 2015.
ISSN: ESSN 1083-351X
PubMed: 26163516
DOI: 10.1074/JBC.M115.659136
Page generated: Sun Dec 13 10:46:33 2020

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