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Cobalt in PDB 5aeb: Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome.

Enzymatic activity of Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome.

All present enzymatic activity of Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome.:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome., PDB code: 5aeb was solved by P.Power, R.Herman, F.Kerff, F.Bouillenne, M.M.Rodriguez, M.Galleni, J.Handelsman, G.Gutkind, P.Charlier, E.Sauvage, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.93 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.148, 80.616, 78.288, 90.00, 98.83, 90.00
R / Rfree (%) 18.4 / 23.5

Other elements in 5aeb:

The structure of Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome. also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome. (pdb code 5aeb). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome., PDB code: 5aeb:

Cobalt binding site 1 out of 1 in 5aeb

Go back to Cobalt Binding Sites List in 5aeb
Cobalt binding site 1 out of 1 in the Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra- 12 From An Alaskan Soil Metagenome. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co1311

b:6.4
occ:0.70
NE2 B:HIS175 1.9 23.8 1.0
OE2 A:GLU140 1.9 25.7 1.0
OE1 B:GLU140 1.9 22.1 1.0
NE2 A:HIS175 2.0 24.2 1.0
OE1 A:GLU140 2.4 26.5 1.0
CD A:GLU140 2.4 25.1 1.0
CE1 B:HIS175 2.7 24.6 1.0
CD B:GLU140 2.8 22.1 1.0
CD2 A:HIS175 2.9 23.9 1.0
CD2 B:HIS175 3.0 23.9 1.0
CE1 A:HIS175 3.1 24.4 1.0
OE2 B:GLU140 3.2 22.8 1.0
CG A:GLU140 3.8 23.8 1.0
ND1 B:HIS175 3.9 24.3 1.0
CG B:HIS175 4.1 23.7 1.0
CG A:HIS175 4.1 23.7 1.0
CG B:GLU140 4.2 20.9 1.0
ND1 A:HIS175 4.2 24.0 1.0
CB B:GLU140 4.5 20.1 1.0
CB A:GLU140 4.5 22.4 1.0
CB A:LEU173 4.8 23.2 1.0

Reference:

M.M.Rodriguez, R.Herman, B.Ghiglione, F.Kerff, G.D'amico Gonzalez, F.Bouillenne, M.Galleni, J.Handelsman, P.Charlier, G.Gutkind, E.Sauvage, P.Power. Crystal Structure and Kinetic Analysis of the Class B3 Di-Zinc Metallo-Beta-Lactamase Lra-12 From An Alaskan Soil Metagenome. Plos One V. 12 82043 2017.
ISSN: ESSN 1932-6203
PubMed: 28750094
DOI: 10.1371/JOURNAL.PONE.0182043
Page generated: Sun Dec 13 10:46:41 2020

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