Cobalt in PDB 5b7y: Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+

The structure of Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+, PDB code: 5b7y was solved by T.P.Cao, S.M.Shin, D.W.Lee, S.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.15 / 1.32
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	50.284, 55.255, 58.754, 107.14, 102.35, 92.20
R / Rfree (%)	17.1 / 18.9

The binding sites of Cobalt atom in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+ (pdb code 5b7y). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+, PDB code: 5b7y:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Co303 b:10.5 occ:1.00 OE2 A:GLU149 2.0 10.3 1.0 OD2 A:ASP182 2.0 9.7 1.0 ND1 A:HIS208 2.1 9.8 1.0 OE2 A:GLU243 2.1 11.2 1.0 O A:HOH438 2.1 15.7 1.0 CD A:GLU149 2.9 11.1 1.0 CE1 A:HIS208 3.0 11.0 1.0 CD A:GLU243 3.1 13.5 1.0 CG A:ASP182 3.1 9.8 1.0 CG A:HIS208 3.1 9.4 1.0 OE1 A:GLU149 3.2 11.8 1.0 OE1 A:GLU243 3.4 14.4 1.0 CB A:HIS208 3.5 9.5 1.0 CB A:ASP182 3.5 10.2 1.0 O A:HOH529 3.9 15.6 1.0 NH2 A:ARG214 4.0 12.4 1.0 NE2 A:HIS208 4.2 10.0 1.0 OD1 A:ASP182 4.2 11.4 1.0 CD2 A:HIS208 4.2 10.4 1.0 O A:HOH534 4.2 11.6 1.0 CD2 A:HIS185 4.3 10.9 1.0 CG A:GLU149 4.3 9.8 1.0 CG A:GLU243 4.4 12.9 1.0 NE2 A:HIS185 4.5 10.9 1.0 CD2 A:LEU180 4.7 16.4 1.0 CB A:GLU243 4.7 11.7 1.0 CA A:ASP182 4.8 9.6 1.0 CA A:HIS208 5.0 9.8 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Hyperthermophilic Thermotoga Maritima L-Ketose-3- Epimerase with CO2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Co302 b:11.1 occ:1.00 OE2 B:GLU149 2.0 11.6 1.0 OD2 B:ASP182 2.1 11.1 1.0 OE2 B:GLU243 2.1 13.0 1.0 ND1 B:HIS208 2.1 10.9 1.0 O B:HOH417 2.1 15.6 1.0 CD B:GLU149 2.9 11.0 1.0 CD B:GLU243 3.0 14.0 1.0 CE1 B:HIS208 3.0 10.9 1.0 CG B:ASP182 3.1 11.0 1.0 CG B:HIS208 3.1 10.1 1.0 OE1 B:GLU149 3.2 12.7 1.0 OE1 B:GLU243 3.3 14.6 1.0 CB B:HIS208 3.4 11.0 1.0 CB B:ASP182 3.5 10.7 1.0 O B:HOH528 3.8 16.4 1.0 NH2 B:ARG214 4.0 13.7 1.0 NE2 B:HIS208 4.2 12.1 1.0 OD1 B:ASP182 4.2 12.0 1.0 O B:HOH554 4.2 13.0 1.0 CD2 B:HIS208 4.2 11.2 1.0 CG B:GLU149 4.3 10.1 1.0 CD2 B:HIS185 4.3 11.2 1.0 CG B:GLU243 4.4 13.8 1.0 NE2 B:HIS185 4.5 12.1 1.0 CB B:GLU243 4.7 11.5 1.0 CA B:ASP182 4.8 10.5 1.0 CA B:HIS208 5.0 11.4 1.0

S.M.Shin, T.P.Cao, J.M.Choi, S.B.Kim, S.J.Lee, S.H.Lee, D.W.Lee. TM0416, A Hyperthermophilic Promiscuous Nonphosphorylated Sugar Isomerase, Catalyzes Various C5AND C6EPIMERIZATION Reactions Appl. Environ. Microbiol. V. 83 2017.
ISSN: ESSN 1098-5336
PubMed: 28258150
DOI: 10.1128/AEM.03291-16