Cobalt in PDB 5c8f: Crystal Structure of Light-Exposed Full-Length Thermus Thermophilus Carh Bound to Cobalamin

The structure of Crystal Structure of Light-Exposed Full-Length Thermus Thermophilus Carh Bound to Cobalamin, PDB code: 5c8f was solved by M.Jost, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	89.74 / 2.65
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	126.910, 126.910, 149.530, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 20.3

The structure of Crystal Structure of Light-Exposed Full-Length Thermus Thermophilus Carh Bound to Cobalamin also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Cobalt atom in the Crystal Structure of Light-Exposed Full-Length Thermus Thermophilus Carh Bound to Cobalamin (pdb code 5c8f). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Light-Exposed Full-Length Thermus Thermophilus Carh Bound to Cobalamin, PDB code: 5c8f:

Cobalt binding site 1 out of 1 in the Crystal Structure of Light-Exposed Full-Length Thermus Thermophilus Carh Bound to Cobalamin


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Light-Exposed Full-Length Thermus Thermophilus Carh Bound to Cobalamin within 5.0Å range: probe atom residue distance (Å) B Occ A:Co301 b:98.9 occ:1.00 CO A:B12301 0.0 98.9 1.0 N21 A:B12301 1.9 0.7 1.0 N24 A:B12301 1.9 95.7 1.0 N23 A:B12301 1.9 91.5 1.0 N22 A:B12301 1.9 0.9 1.0 NE2 A:HIS177 2.2 0.7 1.0 NE2 A:HIS132 2.2 0.8 1.0 C19 A:B12301 2.8 0.0 1.0 C9 A:B12301 2.9 0.9 1.0 C1 A:B12301 2.9 0.3 1.0 C4 A:B12301 2.9 0.8 1.0 C11 A:B12301 2.9 83.8 1.0 CE1 A:HIS132 2.9 0.9 1.0 C14 A:B12301 3.0 89.0 1.0 C16 A:B12301 3.0 0.7 1.0 C6 A:B12301 3.0 0.9 1.0 CE1 A:HIS177 3.1 0.5 1.0 C10 A:B12301 3.2 78.5 1.0 CD2 A:HIS177 3.3 91.2 1.0 C5 A:B12301 3.4 0.9 1.0 C15 A:B12301 3.4 82.4 1.0 CD2 A:HIS132 3.4 0.2 1.0 C20 A:B12301 3.6 96.6 1.0 C2 A:B12301 4.1 0.7 1.0 C18 A:B12301 4.1 98.5 1.0 ND1 A:HIS132 4.1 0.6 1.0 C3 A:B12301 4.2 0.8 1.0 C8 A:B12301 4.2 0.6 1.0 C12 A:B12301 4.2 78.8 1.0 ND1 A:HIS177 4.2 0.0 1.0 C17 A:B12301 4.3 0.7 1.0 C13 A:B12301 4.3 78.6 1.0 C7 A:B12301 4.3 0.3 1.0 C26 A:B12301 4.3 0.9 1.0 CG A:HIS177 4.4 0.3 1.0 CG A:HIS132 4.4 0.5 1.0 C35 A:B12301 4.9 92.2 1.0 C53 A:B12301 4.9 81.1 1.0 C46 A:B12301 4.9 84.1 1.0

M.Jost, J.Fernandez-Zapata, M.C.Polanco, J.M.Ortiz-Guerrero, P.Y.Chen, G.Kang, S.Padmanabhan, M.Elias-Arnanz, C.L.Drennan. Structural Basis For Gene Regulation By A B12-Dependent Photoreceptor. Nature V. 526 536 2015.
ISSN: ESSN 1476-4687
PubMed: 26416754
DOI: 10.1038/NATURE14950