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Cobalt in PDB 5e3x: Crystal Structure of Thermostable Carboxypeptidase (Fiscp) From Fervidobacterium Islandicum Aw-1

Protein crystallography data

The structure of Crystal Structure of Thermostable Carboxypeptidase (Fiscp) From Fervidobacterium Islandicum Aw-1, PDB code: 5e3x was solved by I.Dhanasingh, Y.-J.Lee, D.W.Lee, S.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.32 / 2.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 107.105, 56.757, 89.183, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 24

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Thermostable Carboxypeptidase (Fiscp) From Fervidobacterium Islandicum Aw-1 (pdb code 5e3x). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Thermostable Carboxypeptidase (Fiscp) From Fervidobacterium Islandicum Aw-1, PDB code: 5e3x:

Cobalt binding site 1 out of 1 in 5e3x

Go back to Cobalt Binding Sites List in 5e3x
Cobalt binding site 1 out of 1 in the Crystal Structure of Thermostable Carboxypeptidase (Fiscp) From Fervidobacterium Islandicum Aw-1


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Thermostable Carboxypeptidase (Fiscp) From Fervidobacterium Islandicum Aw-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co501

b:22.8
occ:1.00
NE2 A:HIS257 2.1 14.8 1.0
O A:HOH680 2.1 29.1 1.0
NE2 A:HIS253 2.2 13.6 1.0
OE1 A:GLU283 2.3 22.7 1.0
O A:HOH675 2.4 27.5 1.0
O A:HOH850 2.5 21.5 1.0
CE1 A:HIS257 3.1 15.4 1.0
CD2 A:HIS253 3.1 12.1 1.0
CD2 A:HIS257 3.1 14.0 1.0
CE1 A:HIS253 3.2 11.7 1.0
CD A:GLU283 3.2 24.1 1.0
OE2 A:GLU283 3.4 24.1 1.0
OG A:SER286 3.5 15.6 1.0
O A:HOH890 3.7 33.9 1.0
CB A:SER286 4.0 12.6 1.0
ND1 A:HIS257 4.2 16.8 1.0
CG A:HIS257 4.3 15.9 1.0
CG A:HIS253 4.3 14.0 1.0
ND1 A:HIS253 4.3 14.9 1.0
CG A:GLU283 4.6 20.7 1.0
O A:HOH765 4.7 21.6 1.0
OE1 A:GLU254 4.9 13.6 1.0
OE2 A:GLU254 5.0 21.3 1.0

Reference:

Y.-J.Lee, I.Dhanasingh, J.-S.Ahn, H.-S.Jin, J.M.Choi, S.H.Lee, D.-W.Lee. Biochemical and Structural Characterization of A Keratin-Degrading M32 Carboxypeptidase From Fervidobacterium Islandicum Aw-1 Biochem.Biophys.Res.Commun. V. 468 927 2015.
ISSN: ESSN 1090-2104
PubMed: 26603937
DOI: 10.1016/J.BBRC.2015.11.058
Page generated: Tue Jul 30 17:49:47 2024

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